Results 41 - 60 of 151 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11089 | 5' | -65.4 | NC_002794.1 | + | 177417 | 0.67 | 0.535448 |
Target: 5'- gGAU-CCGGGUuucuagaacUCGCGAUcCGGCGGGGa -3' miRNA: 3'- -CUGcGGCCCA---------GGCGCUGcGCCGCCCU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 134107 | 0.67 | 0.526409 |
Target: 5'- gGACGaCGGacccccuccGUCCGaCGGCGCGGCGagcgcGGAa -3' miRNA: 3'- -CUGCgGCC---------CAGGC-GCUGCGCCGC-----CCU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 187917 | 0.67 | 0.525508 |
Target: 5'- -cCGCCGGGccccgCCGCGAccgucgcgucaCGCGugcgcgcgcgagcGCGGGAc -3' miRNA: 3'- cuGCGGCCCa----GGCGCU-----------GCGC-------------CGCCCU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 101627 | 0.67 | 0.517428 |
Target: 5'- -gUGCCGuuucGUCCGCGAgCGUGGgCGGGc -3' miRNA: 3'- cuGCGGCc---CAGGCGCU-GCGCC-GCCCu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 63496 | 0.67 | 0.517428 |
Target: 5'- cGACGCCGcGGcgucgucgUCCGCGACGCcucccGCGcGAg -3' miRNA: 3'- -CUGCGGC-CC--------AGGCGCUGCGc----CGCcCU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 176534 | 0.67 | 0.517428 |
Target: 5'- -uCGCaucGGUCCcuuuggGCGACGCGGCGGu- -3' miRNA: 3'- cuGCGgc-CCAGG------CGCUGCGCCGCCcu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 19515 | 0.67 | 0.517428 |
Target: 5'- cGCGCCGcucGGagCGcCGGCGCGGCGcGGc -3' miRNA: 3'- cUGCGGC---CCagGC-GCUGCGCCGC-CCu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 116111 | 0.67 | 0.517428 |
Target: 5'- cGAgGUCGaGGUcgaguccgCCGCGGCgGCGGCGGcGGc -3' miRNA: 3'- -CUgCGGC-CCA--------GGCGCUG-CGCCGCC-CU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 184571 | 0.67 | 0.517428 |
Target: 5'- cGCGCCG---CCGCGGCgGCGGCGGc- -3' miRNA: 3'- cUGCGGCccaGGCGCUG-CGCCGCCcu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 92311 | 0.67 | 0.517428 |
Target: 5'- --nGCUGGG--CGCGG-GCGGCGGGGg -3' miRNA: 3'- cugCGGCCCagGCGCUgCGCCGCCCU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 187480 | 0.67 | 0.515639 |
Target: 5'- cGCGCCGGGccgaggacgaggCCGCGcAgGCGGCcaGGGc -3' miRNA: 3'- cUGCGGCCCa-----------GGCGC-UgCGCCG--CCCu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 118296 | 0.67 | 0.512068 |
Target: 5'- cGCGCCGGGcgcgUCgcucgucgucgucguCGCGACG-GGCGGcGAg -3' miRNA: 3'- cUGCGGCCC----AG---------------GCGCUGCgCCGCC-CU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 43897 | 0.67 | 0.508508 |
Target: 5'- -uCGCCGGcGUCuCGUGAggaGCGGCGcGGu -3' miRNA: 3'- cuGCGGCC-CAG-GCGCUg--CGCCGC-CCu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 55259 | 0.67 | 0.508508 |
Target: 5'- gGACGCCGaagagCCGgGGgGCGGCGGuGGc -3' miRNA: 3'- -CUGCGGCcca--GGCgCUgCGCCGCC-CU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 195111 | 0.67 | 0.508508 |
Target: 5'- cGGCGUcuCGuGcGcCCGCGGCGCGcGCGGGc -3' miRNA: 3'- -CUGCG--GC-C-CaGGCGCUGCGC-CGCCCu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 190349 | 0.67 | 0.508508 |
Target: 5'- uGCGUCaGGUCgucggccgCGCGGCGCaGCGGGu -3' miRNA: 3'- cUGCGGcCCAG--------GCGCUGCGcCGCCCu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 120051 | 0.67 | 0.50762 |
Target: 5'- cGGCGgCGGuGgcggCCGCggaggccGACGCGGCGGuGGc -3' miRNA: 3'- -CUGCgGCC-Ca---GGCG-------CUGCGCCGCC-CU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 137389 | 0.67 | 0.505844 |
Target: 5'- cGACGCggguccggucugucCGGcGUCCGCgGACGCcGCGGaGAc -3' miRNA: 3'- -CUGCG--------------GCC-CAGGCG-CUGCGcCGCC-CU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 123266 | 0.68 | 0.482156 |
Target: 5'- cGGCugguCCGGG-CCGCGGuCGUcGCGGGAg -3' miRNA: 3'- -CUGc---GGCCCaGGCGCU-GCGcCGCCCU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 122183 | 0.68 | 0.473519 |
Target: 5'- cGGCGCgCGcGUgUGCGACGCGGCGa-- -3' miRNA: 3'- -CUGCG-GCcCAgGCGCUGCGCCGCccu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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