miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11089 5' -65.4 NC_002794.1 + 41623 0.66 0.609318
Target:  5'- cGAUGCCGGGaaUCCgguGCGACaggaugaaGGCGGcGAa -3'
miRNA:   3'- -CUGCGGCCC--AGG---CGCUGcg------CCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 43897 0.67 0.508508
Target:  5'- -uCGCCGGcGUCuCGUGAggaGCGGCGcGGu -3'
miRNA:   3'- cuGCGGCC-CAG-GCGCUg--CGCCGC-CCu -5'
11089 5' -65.4 NC_002794.1 + 44308 0.73 0.252781
Target:  5'- cGAgGCgGGGagcgaCCGCGAgCGCGGCGGcGAa -3'
miRNA:   3'- -CUgCGgCCCa----GGCGCU-GCGCCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 44347 0.72 0.287863
Target:  5'- cGGCGCCGGcGagaCCGagaGCGCGGCGGGc -3'
miRNA:   3'- -CUGCGGCC-Ca--GGCgc-UGCGCCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 44704 0.66 0.590659
Target:  5'- -cCGCCcGG-CCGCGAcCGCGGCGa-- -3'
miRNA:   3'- cuGCGGcCCaGGCGCU-GCGCCGCccu -5'
11089 5' -65.4 NC_002794.1 + 45022 0.75 0.184564
Target:  5'- cGugGCCGGGugcUCCGCacccaGCGCGGUGGcGAg -3'
miRNA:   3'- -CugCGGCCC---AGGCGc----UGCGCCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 47741 0.74 0.221292
Target:  5'- -cCGCCGGGUCCaCGugGCGGcCGuGGu -3'
miRNA:   3'- cuGCGGCCCAGGcGCugCGCC-GC-CCu -5'
11089 5' -65.4 NC_002794.1 + 47945 0.69 0.415397
Target:  5'- cGGCGCCGcGcGUCC-CGGCGCcGGCuGGGc -3'
miRNA:   3'- -CUGCGGC-C-CAGGcGCUGCG-CCG-CCCu -5'
11089 5' -65.4 NC_002794.1 + 49014 0.68 0.448088
Target:  5'- cGCGCCGcGGcggCCGCGGCGUcguccGGCGcGGu -3'
miRNA:   3'- cUGCGGC-CCa--GGCGCUGCG-----CCGC-CCu -5'
11089 5' -65.4 NC_002794.1 + 49398 0.66 0.599979
Target:  5'- -cCGCCGucggccacggcGG-CCGCGGCgGCGGCGGc- -3'
miRNA:   3'- cuGCGGC-----------CCaGGCGCUG-CGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 53253 0.7 0.376659
Target:  5'- cGCGCCGGcGUcgCCGCGcgacaACGgGGCGGcGAg -3'
miRNA:   3'- cUGCGGCC-CA--GGCGC-----UGCgCCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 53770 0.75 0.176263
Target:  5'- cGGCGgCGGGacgcCCGCGACGCgcccGGCGGGu -3'
miRNA:   3'- -CUGCgGCCCa---GGCGCUGCG----CCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 55259 0.67 0.508508
Target:  5'- gGACGCCGaagagCCGgGGgGCGGCGGuGGc -3'
miRNA:   3'- -CUGCGGCcca--GGCgCUgCGCCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 55301 0.66 0.581365
Target:  5'- cGGCGgCGGcGU-CGCGGCGgGcGCGGGc -3'
miRNA:   3'- -CUGCgGCC-CAgGCGCUGCgC-CGCCCu -5'
11089 5' -65.4 NC_002794.1 + 56322 0.69 0.39186
Target:  5'- uGGCgGCCGuGGcCgGCGACGCGGCGa-- -3'
miRNA:   3'- -CUG-CGGC-CCaGgCGCUGCGCCGCccu -5'
11089 5' -65.4 NC_002794.1 + 58042 0.69 0.414598
Target:  5'- cGCGCCGcccguccccGUCgGCGGCcccggcgGCGGCGGGAc -3'
miRNA:   3'- cUGCGGCc--------CAGgCGCUG-------CGCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 58529 0.67 0.535448
Target:  5'- cACGCCGaGGccuucgCCGCGGCGCGcGCGc-- -3'
miRNA:   3'- cUGCGGC-CCa-----GGCGCUGCGC-CGCccu -5'
11089 5' -65.4 NC_002794.1 + 61529 0.69 0.399609
Target:  5'- -cCGCCGGcGgccgCCGCGAagacgacgccgcCGCGGCGGcGGc -3'
miRNA:   3'- cuGCGGCC-Ca---GGCGCU------------GCGCCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 62062 0.73 0.2314
Target:  5'- cGACGCCGG--CgGCGACGcCGGCGGcGAc -3'
miRNA:   3'- -CUGCGGCCcaGgCGCUGC-GCCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 63496 0.67 0.517428
Target:  5'- cGACGCCGcGGcgucgucgUCCGCGACGCcucccGCGcGAg -3'
miRNA:   3'- -CUGCGGC-CC--------AGGCGCUGCGc----CGCcCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.