miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11089 5' -65.4 NC_002794.1 + 64788 0.78 0.117352
Target:  5'- cGACGCCGGuUCCGCGGCGagcgacgccgcggaCGGCGGcGAg -3'
miRNA:   3'- -CUGCGGCCcAGGCGCUGC--------------GCCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 64832 0.67 0.544542
Target:  5'- cGGCGCCGacgaCCGgaCGGCGCGGCGGc- -3'
miRNA:   3'- -CUGCGGCcca-GGC--GCUGCGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 65158 0.69 0.422625
Target:  5'- -uCGCCGucccGUCCGUGGCGCcgagaccGGCGGGu -3'
miRNA:   3'- cuGCGGCc---CAGGCGCUGCG-------CCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 66511 0.7 0.378913
Target:  5'- cGGCGagcgauaggccguccCCGGGUCCGCGaaggucgGCGCcGGCGGa- -3'
miRNA:   3'- -CUGC---------------GGCCCAGGCGC-------UGCG-CCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 66837 0.71 0.30038
Target:  5'- cGACuCCGGGcgccgCCGuCGGCGCGGCGaGGc -3'
miRNA:   3'- -CUGcGGCCCa----GGC-GCUGCGCCGC-CCu -5'
11089 5' -65.4 NC_002794.1 + 68957 0.68 0.462408
Target:  5'- cGGCGCCucucccuccuccgcGGG-CCGCGACGCcGGCGu-- -3'
miRNA:   3'- -CUGCGG--------------CCCaGGCGCUGCG-CCGCccu -5'
11089 5' -65.4 NC_002794.1 + 69741 0.69 0.399609
Target:  5'- aGCGCCacGGcCgGCGACGCcGCGGGGa -3'
miRNA:   3'- cUGCGGc-CCaGgCGCUGCGcCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 71755 0.67 0.544542
Target:  5'- -cCGCCGGcucuuccgaccgGUCCGCGccgucGCGCGGCGa-- -3'
miRNA:   3'- cuGCGGCC------------CAGGCGC-----UGCGCCGCccu -5'
11089 5' -65.4 NC_002794.1 + 72541 0.73 0.241893
Target:  5'- cGCGCCGcgcguGGUCgCGCaACGCGGCcGGGAa -3'
miRNA:   3'- cUGCGGC-----CCAG-GCGcUGCGCCG-CCCU- -5'
11089 5' -65.4 NC_002794.1 + 80421 0.69 0.407455
Target:  5'- uGGCGCCGGGcggggCCGCcGC-CGGCGGc- -3'
miRNA:   3'- -CUGCGGCCCa----GGCGcUGcGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 82472 0.74 0.211563
Target:  5'- cGACGCCGucGGccUCCGCGACGCGGCc--- -3'
miRNA:   3'- -CUGCGGC--CC--AGGCGCUGCGCCGcccu -5'
11089 5' -65.4 NC_002794.1 + 87056 0.7 0.339733
Target:  5'- cGGgGCCGGGUCCuguaGCGACaGCacggugcaggccgGGCGGGu -3'
miRNA:   3'- -CUgCGGCCCAGG----CGCUG-CG-------------CCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 89711 0.68 0.456482
Target:  5'- cGGCGCCGcGGUgCCGauccGCGCGGCgucgguccuugGGGAu -3'
miRNA:   3'- -CUGCGGC-CCA-GGCgc--UGCGCCG-----------CCCU- -5'
11089 5' -65.4 NC_002794.1 + 90088 0.66 0.553685
Target:  5'- uGugGCuCGGcacgcUCUGCGcCGCGGUGGGc -3'
miRNA:   3'- -CugCG-GCCc----AGGCGCuGCGCCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 90463 0.71 0.326663
Target:  5'- -uCGgCGaGG-CCGCG-CGCGGCGGGGc -3'
miRNA:   3'- cuGCgGC-CCaGGCGCuGCGCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 92272 0.78 0.111866
Target:  5'- cGGCGCCGGGcgaggcgcgcaaggUCgGCGACGaGGCGGGGc -3'
miRNA:   3'- -CUGCGGCCC--------------AGgCGCUGCgCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 92311 0.67 0.517428
Target:  5'- --nGCUGGG--CGCGG-GCGGCGGGGg -3'
miRNA:   3'- cugCGGCCCagGCGCUgCGCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 93999 0.74 0.202205
Target:  5'- gGACGCCGGcGcCgGCGGCGggcCGGCGGGu -3'
miRNA:   3'- -CUGCGGCC-CaGgCGCUGC---GCCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 94478 0.7 0.354614
Target:  5'- cGGCGgCGGcGgacgcggCCGCGGgcCGUGGCGGGGa -3'
miRNA:   3'- -CUGCgGCC-Ca------GGCGCU--GCGCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 95760 0.71 0.326663
Target:  5'- -uCGCgGGGcggcggCCGCGACgGCGGcCGGGGc -3'
miRNA:   3'- cuGCGgCCCa-----GGCGCUG-CGCC-GCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.