miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11089 5' -65.4 NC_002794.1 + 154363 0.7 0.384209
Target:  5'- cGCGCgGuccaGG-CCGCGGCgGCGGCGGGc -3'
miRNA:   3'- cUGCGgC----CCaGGCGCUG-CGCCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 152041 0.7 0.376659
Target:  5'- aACGCCGaGUUCGCGAcCGCGGCcGGc -3'
miRNA:   3'- cUGCGGCcCAGGCGCU-GCGCCGcCCu -5'
11089 5' -65.4 NC_002794.1 + 150417 0.66 0.575803
Target:  5'- --aGCCGuGGcCCGCGAgGCuggaccuggaguccgGGCGGGu -3'
miRNA:   3'- cugCGGC-CCaGGCGCUgCG---------------CCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 149257 0.66 0.599979
Target:  5'- cGGCGCCaccacccucGUCCccgccgGCGGCGCGGCGGc- -3'
miRNA:   3'- -CUGCGGcc-------CAGG------CGCUGCGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 148133 0.66 0.572101
Target:  5'- gGGCGCgGGGccgCCGgGGCGagGGCGGu- -3'
miRNA:   3'- -CUGCGgCCCa--GGCgCUGCg-CCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 144992 0.67 0.544542
Target:  5'- cGGCGCCGGGcgUCCGCcuGGCGCaGCa--- -3'
miRNA:   3'- -CUGCGGCCC--AGGCG--CUGCGcCGcccu -5'
11089 5' -65.4 NC_002794.1 + 143279 0.74 0.216381
Target:  5'- cGGCGCCggccgcucgGGGUCgGgCGggugcaGCGCGGCGGGAu -3'
miRNA:   3'- -CUGCGG---------CCCAGgC-GC------UGCGCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 142494 0.73 0.236598
Target:  5'- cGGCGCCGGca--GCGACGUGGCGGa- -3'
miRNA:   3'- -CUGCGGCCcaggCGCUGCGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 142137 0.72 0.27576
Target:  5'- cGAcCGCCGGGUCacgGCGGagGCGGCGGu- -3'
miRNA:   3'- -CU-GCGGCCCAGg--CGCUg-CGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 141645 0.69 0.407455
Target:  5'- --gGCCGGcGUggCCGCGGcCGcCGGCGGGu -3'
miRNA:   3'- cugCGGCC-CA--GGCGCU-GC-GCCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 141438 0.78 0.110003
Target:  5'- gGGCGCCGGGggcgCCgggaGCGGCGCGGCGuccGGAc -3'
miRNA:   3'- -CUGCGGCCCa---GG----CGCUGCGCCGC---CCU- -5'
11089 5' -65.4 NC_002794.1 + 140013 0.75 0.168296
Target:  5'- gGAgGCCGcGGaggCCGCGGCccccgcggGCGGCGGGAg -3'
miRNA:   3'- -CUgCGGC-CCa--GGCGCUG--------CGCCGCCCU- -5'
11089 5' -65.4 NC_002794.1 + 138943 0.71 0.319936
Target:  5'- uGCGCCcccaccguGGcGUgCUGCGACGCGGCGGa- -3'
miRNA:   3'- cUGCGG--------CC-CA-GGCGCUGCGCCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 138667 0.73 0.226298
Target:  5'- -cUGCgGauuGGUCUGCGugGCGGCGGGu -3'
miRNA:   3'- cuGCGgC---CCAGGCGCugCGCCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 137649 0.71 0.319936
Target:  5'- gGGCGCCGGGccUCCgGCGcCGCuGGUGcGGAc -3'
miRNA:   3'- -CUGCGGCCC--AGG-CGCuGCG-CCGC-CCU- -5'
11089 5' -65.4 NC_002794.1 + 137389 0.67 0.505844
Target:  5'- cGACGCggguccggucugucCGGcGUCCGCgGACGCcGCGGaGAc -3'
miRNA:   3'- -CUGCG--------------GCC-CAGGCG-CUGCGcCGCC-CU- -5'
11089 5' -65.4 NC_002794.1 + 136717 0.67 0.535448
Target:  5'- aGGCGCCGG-UCC-CGGCGUccaGGCGGu- -3'
miRNA:   3'- -CUGCGGCCcAGGcGCUGCG---CCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 136395 0.66 0.553685
Target:  5'- cGGCuCCGGGUCgCGCGuGCGCugaacGGCGGu- -3'
miRNA:   3'- -CUGcGGCCCAG-GCGC-UGCG-----CCGCCcu -5'
11089 5' -65.4 NC_002794.1 + 136103 0.66 0.599979
Target:  5'- aGACGUCGGcGUCCuGC-ACcUGGCGGGc -3'
miRNA:   3'- -CUGCGGCC-CAGG-CGcUGcGCCGCCCu -5'
11089 5' -65.4 NC_002794.1 + 135481 0.7 0.36186
Target:  5'- cGACGCCG---CCGuCGACGCGcGCGGGc -3'
miRNA:   3'- -CUGCGGCccaGGC-GCUGCGC-CGCCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.