Results 41 - 60 of 151 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11089 | 5' | -65.4 | NC_002794.1 | + | 126607 | 0.66 | 0.599979 |
Target: 5'- cGAgGCCGGcG-CCGaCGuCGCGGCGuGAg -3' miRNA: 3'- -CUgCGGCC-CaGGC-GCuGCGCCGCcCU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 49398 | 0.66 | 0.599979 |
Target: 5'- -cCGCCGucggccacggcGG-CCGCGGCgGCGGCGGc- -3' miRNA: 3'- cuGCGGC-----------CCaGGCGCUG-CGCCGCCcu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 38457 | 0.66 | 0.609318 |
Target: 5'- --aGCCGGcGcggCCGCGGCGCgcccuuuaugGGCGGaGGa -3' miRNA: 3'- cugCGGCC-Ca--GGCGCUGCG----------CCGCC-CU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 40614 | 0.66 | 0.609318 |
Target: 5'- cGGCGUccgacuccgCGGaGUCCGCGAgCGCGagcugaGCGGGc -3' miRNA: 3'- -CUGCG---------GCC-CAGGCGCU-GCGC------CGCCCu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 116383 | 0.66 | 0.609318 |
Target: 5'- uGGCGUgCGGGUCgaaGaCGAaggUGUGGCGGGGc -3' miRNA: 3'- -CUGCG-GCCCAGg--C-GCU---GCGCCGCCCU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 44704 | 0.66 | 0.590659 |
Target: 5'- -cCGCCcGG-CCGCGAcCGCGGCGa-- -3' miRNA: 3'- cuGCGGcCCaGGCGCU-GCGCCGCccu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 193800 | 0.66 | 0.590659 |
Target: 5'- cGACGCCGGcGcCCGCucgucuggcgccGACGCGucGCGGc- -3' miRNA: 3'- -CUGCGGCC-CaGGCG------------CUGCGC--CGCCcu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 136395 | 0.66 | 0.553685 |
Target: 5'- cGGCuCCGGGUCgCGCGuGCGCugaacGGCGGu- -3' miRNA: 3'- -CUGcGGCCCAG-GCGC-UGCG-----CCGCCcu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 148133 | 0.66 | 0.572101 |
Target: 5'- gGGCGCgGGGccgCCGgGGCGagGGCGGu- -3' miRNA: 3'- -CUGCGgCCCa--GGCgCUGCg-CCGCCcu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 126252 | 0.66 | 0.572101 |
Target: 5'- uGGCGCgCGaGGUCgGCGGCuggcugGCGGCGcuGGGc -3' miRNA: 3'- -CUGCG-GC-CCAGgCGCUG------CGCCGC--CCU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 150417 | 0.66 | 0.575803 |
Target: 5'- --aGCCGuGGcCCGCGAgGCuggaccuggaguccgGGCGGGu -3' miRNA: 3'- cugCGGC-CCaGGCGCUgCG---------------CCGCCCu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 124141 | 0.66 | 0.580437 |
Target: 5'- cGGCGcCCGGGagcggucUCCGCGGgGCc-CGGGAg -3' miRNA: 3'- -CUGC-GGCCC-------AGGCGCUgCGccGCCCU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 55301 | 0.66 | 0.581365 |
Target: 5'- cGGCGgCGGcGU-CGCGGCGgGcGCGGGc -3' miRNA: 3'- -CUGCgGCC-CAgGCGCUGCgC-CGCCCu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 101490 | 0.66 | 0.581365 |
Target: 5'- aACGCCGgcggccGGUCCgaGCGgugcggcacACGcCGGCGGGGu -3' miRNA: 3'- cUGCGGC------CCAGG--CGC---------UGC-GCCGCCCU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 121478 | 0.66 | 0.589729 |
Target: 5'- aGACGaCCGccGGUUCG-GACGCGGCcuccgccGGGGc -3' miRNA: 3'- -CUGC-GGC--CCAGGCgCUGCGCCG-------CCCU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 115957 | 0.66 | 0.590659 |
Target: 5'- -uCGCCGGGgaCCGUGGgGgGgaGCGGGAc -3' miRNA: 3'- cuGCGGCCCa-GGCGCUgCgC--CGCCCU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 182945 | 0.66 | 0.590659 |
Target: 5'- cGGCGCCGGGcUCGagcCGACGgCGGCcGGc -3' miRNA: 3'- -CUGCGGCCCaGGC---GCUGC-GCCGcCCu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 19449 | 0.66 | 0.590659 |
Target: 5'- -cCGagCGGGcacgagCgGCGGCgGCGGCGGGAc -3' miRNA: 3'- cuGCg-GCCCa-----GgCGCUG-CGCCGCCCU- -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 192016 | 0.66 | 0.590659 |
Target: 5'- gGugGCCGcGGcugcuguuUCUGUGGCgGCGGCGGc- -3' miRNA: 3'- -CugCGGC-CC--------AGGCGCUG-CGCCGCCcu -5' |
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11089 | 5' | -65.4 | NC_002794.1 | + | 32870 | 0.66 | 0.590659 |
Target: 5'- -cCGgCGGG-CgGCGGCgGCGGCGGcGGc -3' miRNA: 3'- cuGCgGCCCaGgCGCUG-CGCCGCC-CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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