miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11090 5' -62 NC_002794.1 + 183106 0.66 0.767648
Target:  5'- -uCCGGauCCCGcACGuguuCGGCGGCGGCu- -3'
miRNA:   3'- acGGCC--GGGC-UGCu---GCUGCCGCUGcu -5'
11090 5' -62 NC_002794.1 + 44371 0.66 0.767648
Target:  5'- gGCgGGCgCGACGuccGCGACGcuCGACGc -3'
miRNA:   3'- aCGgCCGgGCUGC---UGCUGCc-GCUGCu -5'
11090 5' -62 NC_002794.1 + 11381 0.66 0.767648
Target:  5'- aGCCGGCCuCGACccACGcCGGCuACa- -3'
miRNA:   3'- aCGGCCGG-GCUGc-UGCuGCCGcUGcu -5'
11090 5' -62 NC_002794.1 + 182559 0.66 0.767648
Target:  5'- gGCCGGCaCCGucacCGG-GAUcuccgugcgGGCGACGAu -3'
miRNA:   3'- aCGGCCG-GGCu---GCUgCUG---------CCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 146311 0.66 0.767648
Target:  5'- uUGaCgGGCUCGcCGACGcGCGGCGGauuCGAc -3'
miRNA:   3'- -AC-GgCCGGGCuGCUGC-UGCCGCU---GCU- -5'
11090 5' -62 NC_002794.1 + 70319 0.66 0.767648
Target:  5'- aGCCGcuucGCCCG-CGAaGACGcCGACGGc -3'
miRNA:   3'- aCGGC----CGGGCuGCUgCUGCcGCUGCU- -5'
11090 5' -62 NC_002794.1 + 43857 0.66 0.767648
Target:  5'- cGCuCGGCCCGGgGcACGuagACGGUGA-GAu -3'
miRNA:   3'- aCG-GCCGGGCUgC-UGC---UGCCGCUgCU- -5'
11090 5' -62 NC_002794.1 + 127941 0.66 0.767648
Target:  5'- gUGUCGGUCaugugGACGugGACguGGCuACGAg -3'
miRNA:   3'- -ACGGCCGGg----CUGCugCUG--CCGcUGCU- -5'
11090 5' -62 NC_002794.1 + 135465 0.66 0.767648
Target:  5'- gGCCcGCggCCGACGACGACGccgccguCGACGc -3'
miRNA:   3'- aCGGcCG--GGCUGCUGCUGCc------GCUGCu -5'
11090 5' -62 NC_002794.1 + 109517 0.66 0.767648
Target:  5'- cGcCCGGCCCG-CGcuCGuuCGGCGuCGGg -3'
miRNA:   3'- aC-GGCCGGGCuGCu-GCu-GCCGCuGCU- -5'
11090 5' -62 NC_002794.1 + 78685 0.66 0.766769
Target:  5'- cGCCGGCCgcaugugCGGcCGAC-ACGGCGcCGc -3'
miRNA:   3'- aCGGCCGG-------GCU-GCUGcUGCCGCuGCu -5'
11090 5' -62 NC_002794.1 + 70239 0.66 0.762359
Target:  5'- gGCCGGCCgccccgcagcagacgCGcaGCGACGGaGGCcGCGAa -3'
miRNA:   3'- aCGGCCGG---------------GC--UGCUGCUgCCGcUGCU- -5'
11090 5' -62 NC_002794.1 + 106404 0.66 0.758813
Target:  5'- gGUCGGacCCCGGCGGCGcCGG-GGCu- -3'
miRNA:   3'- aCGGCC--GGGCUGCUGCuGCCgCUGcu -5'
11090 5' -62 NC_002794.1 + 18249 0.66 0.758813
Target:  5'- cGCgCGGCcgaCCGGCGACcgcgagaugcGCGGCGcCGAg -3'
miRNA:   3'- aCG-GCCG---GGCUGCUGc---------UGCCGCuGCU- -5'
11090 5' -62 NC_002794.1 + 48935 0.66 0.758813
Target:  5'- cGCCaggcGCUCGGCGACcucuucgcaGACGGCGAgcaGAc -3'
miRNA:   3'- aCGGc---CGGGCUGCUG---------CUGCCGCUg--CU- -5'
11090 5' -62 NC_002794.1 + 109299 0.66 0.758813
Target:  5'- cGCUGGCcaacCCGAcggucuCGACGAUGGCcgGGCGc -3'
miRNA:   3'- aCGGCCG----GGCU------GCUGCUGCCG--CUGCu -5'
11090 5' -62 NC_002794.1 + 108434 0.66 0.758813
Target:  5'- -cCCGcGaCCGGCGGCacucGCGGCGGCGGc -3'
miRNA:   3'- acGGC-CgGGCUGCUGc---UGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 122523 0.66 0.758813
Target:  5'- -uCCGGCCgGAuCGACGACcaGGaCGuCGAg -3'
miRNA:   3'- acGGCCGGgCU-GCUGCUG--CC-GCuGCU- -5'
11090 5' -62 NC_002794.1 + 67920 0.66 0.758813
Target:  5'- -cCCGGCucuccCCGAgCGACGG-GGCGAUGGc -3'
miRNA:   3'- acGGCCG-----GGCU-GCUGCUgCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 14256 0.66 0.758813
Target:  5'- cGCCGGCUCGACccCGACcgaGGUGuuCGGc -3'
miRNA:   3'- aCGGCCGGGCUGcuGCUG---CCGCu-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.