Results 41 - 60 of 386 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11090 | 5' | -62 | NC_002794.1 | + | 127941 | 0.66 | 0.767648 |
Target: 5'- gUGUCGGUCaugugGACGugGACguGGCuACGAg -3' miRNA: 3'- -ACGGCCGGg----CUGCugCUG--CCGcUGCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 135465 | 0.66 | 0.767648 |
Target: 5'- gGCCcGCggCCGACGACGACGccgccguCGACGc -3' miRNA: 3'- aCGGcCG--GGCUGCUGCUGCc------GCUGCu -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 109517 | 0.66 | 0.767648 |
Target: 5'- cGcCCGGCCCG-CGcuCGuuCGGCGuCGGg -3' miRNA: 3'- aC-GGCCGGGCuGCu-GCu-GCCGCuGCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 183106 | 0.66 | 0.767648 |
Target: 5'- -uCCGGauCCCGcACGuguuCGGCGGCGGCu- -3' miRNA: 3'- acGGCC--GGGC-UGCu---GCUGCCGCUGcu -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 122523 | 0.66 | 0.758813 |
Target: 5'- -uCCGGCCgGAuCGACGACcaGGaCGuCGAg -3' miRNA: 3'- acGGCCGGgCU-GCUGCUG--CC-GCuGCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 108434 | 0.66 | 0.758813 |
Target: 5'- -cCCGcGaCCGGCGGCacucGCGGCGGCGGc -3' miRNA: 3'- acGGC-CgGGCUGCUGc---UGCCGCUGCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 109299 | 0.66 | 0.758813 |
Target: 5'- cGCUGGCcaacCCGAcggucuCGACGAUGGCcgGGCGc -3' miRNA: 3'- aCGGCCG----GGCU------GCUGCUGCCG--CUGCu -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 38569 | 0.66 | 0.749881 |
Target: 5'- cGCCGGCgCCu-CGACGGaguCGGCcgccuccucccgGACGAg -3' miRNA: 3'- aCGGCCG-GGcuGCUGCU---GCCG------------CUGCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 16751 | 0.66 | 0.749881 |
Target: 5'- uUGCCGGCCCcacCGAaaauCGGC-ACGAa -3' miRNA: 3'- -ACGGCCGGGcu-GCUgcu-GCCGcUGCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 104774 | 0.66 | 0.748983 |
Target: 5'- cGCCGGCgcuCCGAcacgcCGACaGGCGGUGcugcuucGCGAu -3' miRNA: 3'- aCGGCCG---GGCU-----GCUG-CUGCCGC-------UGCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 103573 | 0.66 | 0.749881 |
Target: 5'- cGCCGuGgCCGACGagcaGCGgucgggcaggcaGCGGCGGCa- -3' miRNA: 3'- aCGGC-CgGGCUGC----UGC------------UGCCGCUGcu -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 80624 | 0.66 | 0.749881 |
Target: 5'- cUGCCGGCCgaGcACcucGCGAcCGGCGACc- -3' miRNA: 3'- -ACGGCCGGg-C-UGc--UGCU-GCCGCUGcu -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 132144 | 0.66 | 0.749881 |
Target: 5'- cGCUgGGCCCGGgGAU--CGGgGACGGu -3' miRNA: 3'- aCGG-CCGGGCUgCUGcuGCCgCUGCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 123014 | 0.66 | 0.753465 |
Target: 5'- gGCCGGCuggccgucguguuccCCGACaACGuCGGCGuguACGGc -3' miRNA: 3'- aCGGCCG---------------GGCUGcUGCuGCCGC---UGCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 14607 | 0.66 | 0.758813 |
Target: 5'- cGCCgGGCaCCG-CGACGGggcCGGaGACGGg -3' miRNA: 3'- aCGG-CCG-GGCuGCUGCU---GCCgCUGCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 14256 | 0.66 | 0.758813 |
Target: 5'- cGCCGGCUCGACccCGACcgaGGUGuuCGGc -3' miRNA: 3'- aCGGCCGGGCUGcuGCUG---CCGCu-GCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 106404 | 0.66 | 0.758813 |
Target: 5'- gGUCGGacCCCGGCGGCGcCGG-GGCu- -3' miRNA: 3'- aCGGCC--GGGCUGCUGCuGCCgCUGcu -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 51358 | 0.66 | 0.756143 |
Target: 5'- aGCC-GCCCGA-GGCGGCcgccccguccggccGGCGACa- -3' miRNA: 3'- aCGGcCGGGCUgCUGCUG--------------CCGCUGcu -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 18249 | 0.66 | 0.758813 |
Target: 5'- cGCgCGGCcgaCCGGCGACcgcgagaugcGCGGCGcCGAg -3' miRNA: 3'- aCG-GCCG---GGCUGCUGc---------UGCCGCuGCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 48935 | 0.66 | 0.758813 |
Target: 5'- cGCCaggcGCUCGGCGACcucuucgcaGACGGCGAgcaGAc -3' miRNA: 3'- aCGGc---CGGGCUGCUG---------CUGCCGCUg--CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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