miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11090 5' -62 NC_002794.1 + 107532 0.89 0.033551
Target:  5'- gGCCGGCgCGGCGcCGGCGGCGACGAc -3'
miRNA:   3'- aCGGCCGgGCUGCuGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 79430 0.88 0.038101
Target:  5'- ---gGGCCCGGCGGCGGCGGCGGCGAc -3'
miRNA:   3'- acggCCGGGCUGCUGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 32868 0.87 0.043253
Target:  5'- aGCCGGCgggCGGCGGCGGCGGCGGCGGc -3'
miRNA:   3'- aCGGCCGg--GCUGCUGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 129927 0.87 0.0455
Target:  5'- cGCCaGGCCgUGGCGACGGCGGCGGCGGc -3'
miRNA:   3'- aCGG-CCGG-GCUGCUGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 146995 0.85 0.058551
Target:  5'- cGCCGG-CCGACGuCGGCGGCGGCGGc -3'
miRNA:   3'- aCGGCCgGGCUGCuGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 62065 0.85 0.066373
Target:  5'- cGCCGGCggCGACGcCGGCGGCGACGAc -3'
miRNA:   3'- aCGGCCGg-GCUGCuGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 112340 0.85 0.068054
Target:  5'- cGCCGG-CCGGCGGCGcCGGCGGCGGg -3'
miRNA:   3'- aCGGCCgGGCUGCUGCuGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 145795 0.84 0.073346
Target:  5'- gGCCGGCUCgGACGACGAcgccgccgcCGGCGGCGAg -3'
miRNA:   3'- aCGGCCGGG-CUGCUGCU---------GCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 49402 0.84 0.075197
Target:  5'- cGUCGGCCaCGGCGgccGCGGCGGCGGCGGc -3'
miRNA:   3'- aCGGCCGG-GCUGC---UGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 64829 0.83 0.083055
Target:  5'- aGCCGGCgCCGACGACcgGACGGCGcgGCGGc -3'
miRNA:   3'- aCGGCCG-GGCUGCUG--CUGCCGC--UGCU- -5'
11090 5' -62 NC_002794.1 + 70857 0.82 0.098725
Target:  5'- gUGCCGGCcuccuCCGGCGGCGGCaGCGGCGGc -3'
miRNA:   3'- -ACGGCCG-----GGCUGCUGCUGcCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 116125 0.81 0.111586
Target:  5'- aGUCcGCCgCGGCGGCGGCGGCGGCGGc -3'
miRNA:   3'- aCGGcCGG-GCUGCUGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 119433 0.81 0.11434
Target:  5'- cGCaGGUCCGACGGCGGCGGCGgugGCGGc -3'
miRNA:   3'- aCGgCCGGGCUGCUGCUGCCGC---UGCU- -5'
11090 5' -62 NC_002794.1 + 16339 0.81 0.117157
Target:  5'- gGCCGGCaCCGACGACGuCGGCGcCa- -3'
miRNA:   3'- aCGGCCG-GGCUGCUGCuGCCGCuGcu -5'
11090 5' -62 NC_002794.1 + 179667 0.81 0.119748
Target:  5'- cGCCGGacggcacCCgCGGCGGCGACGGUGGCGGc -3'
miRNA:   3'- aCGGCC-------GG-GCUGCUGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 180005 0.81 0.120039
Target:  5'- gGCgGGCCCGgccACGACGACGGCcGCGGc -3'
miRNA:   3'- aCGgCCGGGC---UGCUGCUGCCGcUGCU- -5'
11090 5' -62 NC_002794.1 + 54977 0.8 0.126002
Target:  5'- uUGCaCGaCCCGccGCGGCGACGGCGGCGAc -3'
miRNA:   3'- -ACG-GCcGGGC--UGCUGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 142473 0.8 0.129085
Target:  5'- cGCCGGCaCCGugGACGcguGCGGCGcCGGc -3'
miRNA:   3'- aCGGCCG-GGCugCUGC---UGCCGCuGCU- -5'
11090 5' -62 NC_002794.1 + 63678 0.8 0.142127
Target:  5'- aGCgCGGCCgCGGCGACGACGaUGACGAc -3'
miRNA:   3'- aCG-GCCGG-GCUGCUGCUGCcGCUGCU- -5'
11090 5' -62 NC_002794.1 + 12215 0.8 0.145571
Target:  5'- gUGCCGGCggcgUCGGCGGCGcCGGCGGCGc -3'
miRNA:   3'- -ACGGCCG----GGCUGCUGCuGCCGCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.