miRNA display CGI


Results 21 - 40 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11090 5' -62 NC_002794.1 + 19452 0.79 0.149091
Target:  5'- aGCgGGCaCGAgCGGCGGCGGCGGCGGg -3'
miRNA:   3'- aCGgCCGgGCU-GCUGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 58060 0.79 0.156364
Target:  5'- cGgCGGcCCCGGCGGCGGCGG-GACGGg -3'
miRNA:   3'- aCgGCC-GGGCUGCUGCUGCCgCUGCU- -5'
11090 5' -62 NC_002794.1 + 82010 0.79 0.157856
Target:  5'- cGCCGGCCgcugacgccgaaaccCGACGaucGCGugGGCGGCGGc -3'
miRNA:   3'- aCGGCCGG---------------GCUGC---UGCugCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 42213 0.79 0.158984
Target:  5'- cGCCGGUCUGccgcuggaucagccGCGAgaCGGCGGCGACGAa -3'
miRNA:   3'- aCGGCCGGGC--------------UGCU--GCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 14652 0.78 0.175967
Target:  5'- cGCCGGCgCCG-CGGCGucgguccgacucGCGGCGGCGGu -3'
miRNA:   3'- aCGGCCG-GGCuGCUGC------------UGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 69749 0.78 0.184403
Target:  5'- gGCCGGCgacgCCG-CGGgGAUGGCGACGAa -3'
miRNA:   3'- aCGGCCG----GGCuGCUgCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 21915 0.78 0.188754
Target:  5'- gUGgCGGCggaGACGACGGCGGCGGCGc -3'
miRNA:   3'- -ACgGCCGgg-CUGCUGCUGCCGCUGCu -5'
11090 5' -62 NC_002794.1 + 94002 0.78 0.188754
Target:  5'- cGCCGGCgCCGGCGGCGGgcCGGCGGg-- -3'
miRNA:   3'- aCGGCCG-GGCUGCUGCU--GCCGCUgcu -5'
11090 5' -62 NC_002794.1 + 154363 0.78 0.188754
Target:  5'- cGCgCGGUCCaGGCcGCGGCGGCGGCGGg -3'
miRNA:   3'- aCG-GCCGGG-CUGcUGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 94036 0.78 0.188754
Target:  5'- gGCgGGCCCGagaGCGGCGGCGGUG-CGGg -3'
miRNA:   3'- aCGgCCGGGC---UGCUGCUGCCGCuGCU- -5'
11090 5' -62 NC_002794.1 + 111098 0.77 0.202351
Target:  5'- gGCgGGCCCGGCGGgaccguggccguCGACGGCGcCGGc -3'
miRNA:   3'- aCGgCCGGGCUGCU------------GCUGCCGCuGCU- -5'
11090 5' -62 NC_002794.1 + 44297 0.77 0.204227
Target:  5'- cGCCGGgCCGGCGaggcggggagcgaccGCGagcGCGGCGGCGAa -3'
miRNA:   3'- aCGGCCgGGCUGC---------------UGC---UGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 55220 0.77 0.221291
Target:  5'- gGCCGGCggucgagCCGACGACGAUGaaGACGAc -3'
miRNA:   3'- aCGGCCG-------GGCUGCUGCUGCcgCUGCU- -5'
11090 5' -62 NC_002794.1 + 55270 0.77 0.221796
Target:  5'- aGCCGGggggCGGCGGUGGCGGCGACGAg -3'
miRNA:   3'- aCGGCCgg--GCUGCUGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 120073 0.76 0.2269
Target:  5'- gGCCGaCgCGGCGGUGGCGGCGACGAc -3'
miRNA:   3'- aCGGCcGgGCUGCUGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 114694 0.76 0.232103
Target:  5'- gGcCCGGaCCUccugcgagacgGACGGCGGCGGCGGCGGc -3'
miRNA:   3'- aC-GGCC-GGG-----------CUGCUGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 87354 0.76 0.232103
Target:  5'- aGCgGGUCCGGCGGCGAgCGGCGuucuggGCGGc -3'
miRNA:   3'- aCGgCCGGGCUGCUGCU-GCCGC------UGCU- -5'
11090 5' -62 NC_002794.1 + 101272 0.76 0.237406
Target:  5'- -cCCGGCgCCGGUGGCGGCGGCGGgGAg -3'
miRNA:   3'- acGGCCG-GGCUGCUGCUGCCGCUgCU- -5'
11090 5' -62 NC_002794.1 + 552 0.76 0.237406
Target:  5'- uUGcCCGGCCuCGGCG-CGGCGGUGGCa- -3'
miRNA:   3'- -AC-GGCCGG-GCUGCuGCUGCCGCUGcu -5'
11090 5' -62 NC_002794.1 + 17291 0.76 0.242811
Target:  5'- cGCCgacGGUCaCGACGAucaCGACGGUGACGAc -3'
miRNA:   3'- aCGG---CCGG-GCUGCU---GCUGCCGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.