miRNA display CGI


Results 41 - 60 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11090 5' -62 NC_002794.1 + 82155 0.76 0.242811
Target:  5'- -cCCGGCCCGACGGCucCGGCGccCGAg -3'
miRNA:   3'- acGGCCGGGCUGCUGcuGCCGCu-GCU- -5'
11090 5' -62 NC_002794.1 + 17291 0.76 0.242811
Target:  5'- cGCCgacGGUCaCGACGAucaCGACGGUGACGAc -3'
miRNA:   3'- aCGG---CCGG-GCUGCU---GCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 126610 0.76 0.248317
Target:  5'- gGCCGGCgCCGACGuCG-CGGCGugagcGCGAc -3'
miRNA:   3'- aCGGCCG-GGCUGCuGCuGCCGC-----UGCU- -5'
11090 5' -62 NC_002794.1 + 107202 0.76 0.25336
Target:  5'- cGCCGGCCucgccCGGCGccgccggGCGGCGcGCGACGGg -3'
miRNA:   3'- aCGGCCGG-----GCUGC-------UGCUGC-CGCUGCU- -5'
11090 5' -62 NC_002794.1 + 71302 0.76 0.253926
Target:  5'- cGCCGGCgCGcucggGCGGCGAgcgcgccaccuCGGCGGCGAu -3'
miRNA:   3'- aCGGCCGgGC-----UGCUGCU-----------GCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 110464 0.75 0.257914
Target:  5'- aGCCGGCUCGuCGGCucgggggguagagaGGCGGUGGCGGc -3'
miRNA:   3'- aCGGCCGGGCuGCUG--------------CUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 13808 0.75 0.259639
Target:  5'- cGaCgGGCCCGGC--CGGCGGCGACGGc -3'
miRNA:   3'- aC-GgCCGGGCUGcuGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 10751 0.75 0.259639
Target:  5'- aGgUGuGCCaacgaGACGACGGCGGCGugGAg -3'
miRNA:   3'- aCgGC-CGGg----CUGCUGCUGCCGCugCU- -5'
11090 5' -62 NC_002794.1 + 141819 0.75 0.259639
Target:  5'- aGCCGGUUgGACGACGACGaGCGGa-- -3'
miRNA:   3'- aCGGCCGGgCUGCUGCUGC-CGCUgcu -5'
11090 5' -62 NC_002794.1 + 116938 0.75 0.265456
Target:  5'- cGUCGGCguccCCGGCGGCGGCGuCGGCGGg -3'
miRNA:   3'- aCGGCCG----GGCUGCUGCUGCcGCUGCU- -5'
11090 5' -62 NC_002794.1 + 127247 0.75 0.271378
Target:  5'- gGCCacGGCCaCGACGACGACcacgaccGCGACGGu -3'
miRNA:   3'- aCGG--CCGG-GCUGCUGCUGc------CGCUGCU- -5'
11090 5' -62 NC_002794.1 + 120111 0.75 0.271378
Target:  5'- cGCCGcGCgUGACGcgcGCGACGGCGACc- -3'
miRNA:   3'- aCGGC-CGgGCUGC---UGCUGCCGCUGcu -5'
11090 5' -62 NC_002794.1 + 78376 0.75 0.277406
Target:  5'- gGCCuGCuCCGcCaGCGACGGCGACGAc -3'
miRNA:   3'- aCGGcCG-GGCuGcUGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 44702 0.75 0.283541
Target:  5'- cGCC-GCCCGGCcGCGACcGCGGCGAc -3'
miRNA:   3'- aCGGcCGGGCUGcUGCUGcCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 56326 0.75 0.283541
Target:  5'- gGCCGuGgCCGGCGACG-CGGCGAaGAg -3'
miRNA:   3'- aCGGC-CgGGCUGCUGCuGCCGCUgCU- -5'
11090 5' -62 NC_002794.1 + 18690 0.75 0.283541
Target:  5'- cGCCGuCuCCGGC-ACGGCGGCGGCGGu -3'
miRNA:   3'- aCGGCcG-GGCUGcUGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 190747 0.75 0.283541
Target:  5'- cGCCGuCUCGACGGgGGCGGCGGCc- -3'
miRNA:   3'- aCGGCcGGGCUGCUgCUGCCGCUGcu -5'
11090 5' -62 NC_002794.1 + 95768 0.75 0.289782
Target:  5'- cGgCGGCCgCGACGGCGGCcGgGGCGAg -3'
miRNA:   3'- aCgGCCGG-GCUGCUGCUGcCgCUGCU- -5'
11090 5' -62 NC_002794.1 + 127310 0.75 0.289782
Target:  5'- cGCCGaGgCCGucuCGACGACGGaGACGAg -3'
miRNA:   3'- aCGGC-CgGGCu--GCUGCUGCCgCUGCU- -5'
11090 5' -62 NC_002794.1 + 116431 0.75 0.289782
Target:  5'- cGCgGGUCagGACGcCGACGGUGGCGAu -3'
miRNA:   3'- aCGgCCGGg-CUGCuGCUGCCGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.