miRNA display CGI


Results 61 - 80 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11090 5' -62 NC_002794.1 + 128078 0.75 0.296131
Target:  5'- gGCCgaauGGCCCGAguCGGCGACGGggagcuCGACGGg -3'
miRNA:   3'- aCGG----CCGGGCU--GCUGCUGCC------GCUGCU- -5'
11090 5' -62 NC_002794.1 + 114747 0.75 0.296131
Target:  5'- aGCCGGCgccgcccgCCGGCGcCGGuccuCGGCGGCGAg -3'
miRNA:   3'- aCGGCCG--------GGCUGCuGCU----GCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 32613 0.75 0.296131
Target:  5'- gGCCggggaucgGGCCCGcCGACGAagaggggGGCGACGAc -3'
miRNA:   3'- aCGG--------CCGGGCuGCUGCUg------CCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 95881 0.75 0.296131
Target:  5'- gUGgCGaCCCGGCGGCGAgGGCGcACGAc -3'
miRNA:   3'- -ACgGCcGGGCUGCUGCUgCCGC-UGCU- -5'
11090 5' -62 NC_002794.1 + 191667 0.75 0.296131
Target:  5'- gGaCGGCgCCGGCaGCGGCGGCGGCGu -3'
miRNA:   3'- aCgGCCG-GGCUGcUGCUGCCGCUGCu -5'
11090 5' -62 NC_002794.1 + 75047 0.75 0.296131
Target:  5'- aGCCGGUUCGauucGCGAcCGACGGCGuCGGc -3'
miRNA:   3'- aCGGCCGGGC----UGCU-GCUGCCGCuGCU- -5'
11090 5' -62 NC_002794.1 + 63418 0.74 0.299345
Target:  5'- gGCCGgacggacgaugagcGCCCGACaccaccacggccGCGGCGGCGACGAu -3'
miRNA:   3'- aCGGC--------------CGGGCUGc-----------UGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 37736 0.74 0.302587
Target:  5'- cGgCGGCgCCGcCGGCGGCGGCGcgGCGGc -3'
miRNA:   3'- aCgGCCG-GGCuGCUGCUGCCGC--UGCU- -5'
11090 5' -62 NC_002794.1 + 60632 0.74 0.302587
Target:  5'- gGgCGGaCCCGGCGcCGGCGGCGcCGGc -3'
miRNA:   3'- aCgGCC-GGGCUGCuGCUGCCGCuGCU- -5'
11090 5' -62 NC_002794.1 + 46757 0.74 0.305199
Target:  5'- cGCUGGaUCGACGgcgacuucgaccccaGCGGCGGCGGCGAc -3'
miRNA:   3'- aCGGCCgGGCUGC---------------UGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 65926 0.74 0.30915
Target:  5'- cGCCGGCggCGGUGGCGuCGGCGGCGGu -3'
miRNA:   3'- aCGGCCGg-GCUGCUGCuGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 182948 0.74 0.315822
Target:  5'- cGCCgGGCUCGAgcCGACGGCGGcCGGCu- -3'
miRNA:   3'- aCGG-CCGGGCU--GCUGCUGCC-GCUGcu -5'
11090 5' -62 NC_002794.1 + 118262 0.74 0.315822
Target:  5'- gGUCGGCCggggCGGCGGCGcCGGCGuCGGg -3'
miRNA:   3'- aCGGCCGG----GCUGCUGCuGCCGCuGCU- -5'
11090 5' -62 NC_002794.1 + 130322 0.74 0.321919
Target:  5'- -cCUGGCCgaGACGGCGgacgaagGCGGCGACGAc -3'
miRNA:   3'- acGGCCGGg-CUGCUGC-------UGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 94460 0.74 0.322602
Target:  5'- aGUCGGUggCGACGgcaACGGCGGCGGCGGa -3'
miRNA:   3'- aCGGCCGg-GCUGC---UGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 66709 0.74 0.325345
Target:  5'- cGCCGcGCCCGGCacggccgccgccaccGcCGGCGGUGGCGGc -3'
miRNA:   3'- aCGGC-CGGGCUG---------------CuGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 141309 0.74 0.328797
Target:  5'- cGCCGGCgacggcaCCGGCGuCGGCucGGUGGCGAg -3'
miRNA:   3'- aCGGCCG-------GGCUGCuGCUG--CCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 140103 0.74 0.329491
Target:  5'- gGUCGGCggCGAuCGACGGCGGuCGACGGu -3'
miRNA:   3'- aCGGCCGg-GCU-GCUGCUGCC-GCUGCU- -5'
11090 5' -62 NC_002794.1 + 106984 0.74 0.329491
Target:  5'- gGCCGGCaCGGCGGUGGCGGCGcuggccgacGCGAc -3'
miRNA:   3'- aCGGCCGgGCUGCUGCUGCCGC---------UGCU- -5'
11090 5' -62 NC_002794.1 + 119699 0.74 0.329491
Target:  5'- cUGCUGGgCCGGCGGCcacaACGGCGGCu- -3'
miRNA:   3'- -ACGGCCgGGCUGCUGc---UGCCGCUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.