miRNA display CGI


Results 41 - 60 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11090 5' -62 NC_002794.1 + 34103 0.66 0.731755
Target:  5'- gGgCGGCCCgGACcGCGACGuccGCGACc- -3'
miRNA:   3'- aCgGCCGGG-CUGcUGCUGC---CGCUGcu -5'
11090 5' -62 NC_002794.1 + 8125 0.66 0.731755
Target:  5'- cGgCGGCCUccuCGGUGAcCGGCGACGGc -3'
miRNA:   3'- aCgGCCGGGcu-GCUGCU-GCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 145595 0.66 0.731755
Target:  5'- gGCCGGCuCCcGCGGagucgGGCG-CGACGAg -3'
miRNA:   3'- aCGGCCG-GGcUGCUg----CUGCcGCUGCU- -5'
11090 5' -62 NC_002794.1 + 29913 0.66 0.731755
Target:  5'- ---gGGaCCGACGACgGGCaGCGACGAg -3'
miRNA:   3'- acggCCgGGCUGCUG-CUGcCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 94282 0.66 0.731755
Target:  5'- gGCgCGGCCCGAgcgGGgGGCGGCucgGGCGc -3'
miRNA:   3'- aCG-GCCGGGCUg--CUgCUGCCG---CUGCu -5'
11090 5' -62 NC_002794.1 + 53742 0.66 0.731755
Target:  5'- cGCCGGCcgccgcugccgCCGcCGcUGcCGGCGGCGGg -3'
miRNA:   3'- aCGGCCG-----------GGCuGCuGCuGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 187657 0.66 0.731755
Target:  5'- cGCCucgcGGUCC-ACGACGAUcgGGCGAUGc -3'
miRNA:   3'- aCGG----CCGGGcUGCUGCUG--CCGCUGCu -5'
11090 5' -62 NC_002794.1 + 181199 0.66 0.729009
Target:  5'- aGUacaGGCCgCGgucuuccgaaagcaGCGACGAgaucCGGCGACGGc -3'
miRNA:   3'- aCGg--CCGG-GC--------------UGCUGCU----GCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 76479 0.66 0.726257
Target:  5'- cGCCGGCCCGGCcgcagcuccgaccccGACccCGGCccCGAc -3'
miRNA:   3'- aCGGCCGGGCUG---------------CUGcuGCCGcuGCU- -5'
11090 5' -62 NC_002794.1 + 8755 0.66 0.722577
Target:  5'- gGgCGuGUCgCGACGGCgugaaGACGGCGugGGa -3'
miRNA:   3'- aCgGC-CGG-GCUGCUG-----CUGCCGCugCU- -5'
11090 5' -62 NC_002794.1 + 49021 0.66 0.722577
Target:  5'- cGgCGGCCgCGGCGuCGucCGGCG-CGGu -3'
miRNA:   3'- aCgGCCGG-GCUGCuGCu-GCCGCuGCU- -5'
11090 5' -62 NC_002794.1 + 131552 0.66 0.722577
Target:  5'- gGCCucGCCCGugGuCGGCG-CGGCGc -3'
miRNA:   3'- aCGGc-CGGGCugCuGCUGCcGCUGCu -5'
11090 5' -62 NC_002794.1 + 99810 0.66 0.722577
Target:  5'- cGCgGGCgCCGGCGcCGuCGGcCGACc- -3'
miRNA:   3'- aCGgCCG-GGCUGCuGCuGCC-GCUGcu -5'
11090 5' -62 NC_002794.1 + 37934 0.66 0.722577
Target:  5'- cGCCGcggccGCCCGugccuCGGCGAcucgcuCGGCGGCu- -3'
miRNA:   3'- aCGGC-----CGGGCu----GCUGCU------GCCGCUGcu -5'
11090 5' -62 NC_002794.1 + 32510 0.66 0.722577
Target:  5'- uUGCCGGCucCCGcCG-UGcCGGUGAUGAg -3'
miRNA:   3'- -ACGGCCG--GGCuGCuGCuGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 130641 0.66 0.722577
Target:  5'- cGCCGGCCCGcccgccgcccCGcCGcCGGCcGCGGg -3'
miRNA:   3'- aCGGCCGGGCu---------GCuGCuGCCGcUGCU- -5'
11090 5' -62 NC_002794.1 + 100372 0.66 0.722577
Target:  5'- cUGCgaGGUggCCGACGuCcGCGGCGugGAc -3'
miRNA:   3'- -ACGg-CCG--GGCUGCuGcUGCCGCugCU- -5'
11090 5' -62 NC_002794.1 + 91189 0.66 0.722577
Target:  5'- cUGUa--CCCGGCGACgcuguucgcgGACGGCGACGc -3'
miRNA:   3'- -ACGgccGGGCUGCUG----------CUGCCGCUGCu -5'
11090 5' -62 NC_002794.1 + 180682 0.66 0.722577
Target:  5'- cGCCGGCCgCuccCGGCGccCGGCgGGCGGa -3'
miRNA:   3'- aCGGCCGG-Gcu-GCUGCu-GCCG-CUGCU- -5'
11090 5' -62 NC_002794.1 + 107076 0.66 0.721655
Target:  5'- cGCCGGCaugucggagCCGACgGGCGGgGGUGugucgcuGCGAg -3'
miRNA:   3'- aCGGCCG---------GGCUG-CUGCUgCCGC-------UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.