miRNA display CGI


Results 21 - 40 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11090 5' -62 NC_002794.1 + 14479 0.68 0.618757
Target:  5'- cGCCGcGCUCGcUGuucGCGGCGGCGGCc- -3'
miRNA:   3'- aCGGC-CGGGCuGC---UGCUGCCGCUGcu -5'
11090 5' -62 NC_002794.1 + 14607 0.66 0.758813
Target:  5'- cGCCgGGCaCCG-CGACGGggcCGGaGACGGg -3'
miRNA:   3'- aCGG-CCG-GGCuGCUGCU---GCCgCUGCU- -5'
11090 5' -62 NC_002794.1 + 14652 0.78 0.175967
Target:  5'- cGCCGGCgCCG-CGGCGucgguccgacucGCGGCGGCGGu -3'
miRNA:   3'- aCGGCCG-GGCuGCUGC------------UGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 14783 0.67 0.704025
Target:  5'- gGCCGGCgaggCCGGCG-UGACcGCGACc- -3'
miRNA:   3'- aCGGCCG----GGCUGCuGCUGcCGCUGcu -5'
11090 5' -62 NC_002794.1 + 15184 0.68 0.622566
Target:  5'- cGCCGGagaCCGggugaacgaccgcccGCGAUGGCGGCGucccccguccGCGGg -3'
miRNA:   3'- aCGGCCg--GGC---------------UGCUGCUGCCGC----------UGCU- -5'
11090 5' -62 NC_002794.1 + 16339 0.81 0.117157
Target:  5'- gGCCGGCaCCGACGACGuCGGCGcCa- -3'
miRNA:   3'- aCGGCCG-GGCUGCUGCuGCCGCuGcu -5'
11090 5' -62 NC_002794.1 + 16751 0.66 0.749881
Target:  5'- uUGCCGGCCCcacCGAaaauCGGC-ACGAa -3'
miRNA:   3'- -ACGGCCGGGcu-GCUgcu-GCCGcUGCU- -5'
11090 5' -62 NC_002794.1 + 17099 0.67 0.703091
Target:  5'- cGCCGacguuCCCGACGAucgccuuucCGACGGUcgaagccGGCGAa -3'
miRNA:   3'- aCGGCc----GGGCUGCU---------GCUGCCG-------CUGCU- -5'
11090 5' -62 NC_002794.1 + 17237 0.71 0.479965
Target:  5'- cGCCGccaccaCCCuuCGACGGCGGCGACc- -3'
miRNA:   3'- aCGGCc-----GGGcuGCUGCUGCCGCUGcu -5'
11090 5' -62 NC_002794.1 + 17291 0.76 0.242811
Target:  5'- cGCCgacGGUCaCGACGAucaCGACGGUGACGAc -3'
miRNA:   3'- aCGG---CCGG-GCUGCU---GCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 17996 0.66 0.747184
Target:  5'- cGCCGGCgaguacuaCGAgGACGGCGuguuccaacuguacGUGACGGc -3'
miRNA:   3'- aCGGCCGg-------GCUgCUGCUGC--------------CGCUGCU- -5'
11090 5' -62 NC_002794.1 + 18249 0.66 0.758813
Target:  5'- cGCgCGGCcgaCCGGCGACcgcgagaugcGCGGCGcCGAg -3'
miRNA:   3'- aCG-GCCG---GGCUGCUGc---------UGCCGCuGCU- -5'
11090 5' -62 NC_002794.1 + 18394 0.67 0.67582
Target:  5'- aUGCCGaGCCaaACGACGGgucUGGCaaGACGAa -3'
miRNA:   3'- -ACGGC-CGGgcUGCUGCU---GCCG--CUGCU- -5'
11090 5' -62 NC_002794.1 + 18690 0.75 0.283541
Target:  5'- cGCCGuCuCCGGC-ACGGCGGCGGCGGu -3'
miRNA:   3'- aCGGCcG-GGCUGcUGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 18736 0.71 0.479085
Target:  5'- aGCCGccccaacGCCaCGACGGcCGGCGGCaACGAc -3'
miRNA:   3'- aCGGC-------CGG-GCUGCU-GCUGCCGcUGCU- -5'
11090 5' -62 NC_002794.1 + 18806 0.69 0.570437
Target:  5'- cGCCGGCCaacggguCGGCGACcuCGGcCGGCGc -3'
miRNA:   3'- aCGGCCGG-------GCUGCUGcuGCC-GCUGCu -5'
11090 5' -62 NC_002794.1 + 19452 0.79 0.149091
Target:  5'- aGCgGGCaCGAgCGGCGGCGGCGGCGGg -3'
miRNA:   3'- aCGgCCGgGCU-GCUGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 19483 0.74 0.329491
Target:  5'- cGCCGgucGCCCGcacCGACGACGGCGGa-- -3'
miRNA:   3'- aCGGC---CGGGCu--GCUGCUGCCGCUgcu -5'
11090 5' -62 NC_002794.1 + 19529 0.68 0.65685
Target:  5'- cGCCGGCgCGGCG-CGGCccgccGGUGuCGGa -3'
miRNA:   3'- aCGGCCGgGCUGCuGCUG-----CCGCuGCU- -5'
11090 5' -62 NC_002794.1 + 19595 0.71 0.451349
Target:  5'- -uCCGGCCCGGCGA--GCGGCcgagccaccgacucGACGAa -3'
miRNA:   3'- acGGCCGGGCUGCUgcUGCCG--------------CUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.