miRNA display CGI


Results 41 - 60 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11090 5' -62 NC_002794.1 + 19711 0.66 0.74086
Target:  5'- cUGaCCGGCCCGAucuCGAuCGACcGCGAg-- -3'
miRNA:   3'- -AC-GGCCGGGCU---GCU-GCUGcCGCUgcu -5'
11090 5' -62 NC_002794.1 + 20238 0.67 0.707754
Target:  5'- cGCCuGGaugcucgccaauaucCCUGACGAgcagagacCGACGGCGAcCGAa -3'
miRNA:   3'- aCGG-CC---------------GGGCUGCU--------GCUGCCGCU-GCU- -5'
11090 5' -62 NC_002794.1 + 20623 0.67 0.67582
Target:  5'- aUGcCCGGCuCCGGCugccuCGACGGCugguGCGAg -3'
miRNA:   3'- -AC-GGCCG-GGCUGcu---GCUGCCGc---UGCU- -5'
11090 5' -62 NC_002794.1 + 20964 0.73 0.34359
Target:  5'- cGCUGGCaacagcucaCCGGCaGCGGCGGCGGCa- -3'
miRNA:   3'- aCGGCCG---------GGCUGcUGCUGCCGCUGcu -5'
11090 5' -62 NC_002794.1 + 21626 0.68 0.634953
Target:  5'- cGCCGGgaggaCGACGAgGaagaagacgaagaaGCGGCGGCGGu -3'
miRNA:   3'- aCGGCCgg---GCUGCUgC--------------UGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 21915 0.78 0.188754
Target:  5'- gUGgCGGCggaGACGACGGCGGCGGCGc -3'
miRNA:   3'- -ACgGCCGgg-CUGCUGCUGCCGCUGCu -5'
11090 5' -62 NC_002794.1 + 22891 0.72 0.419591
Target:  5'- -cCUGGCCUcccguugGugGACGGCGGCGACc- -3'
miRNA:   3'- acGGCCGGG-------CugCUGCUGCCGCUGcu -5'
11090 5' -62 NC_002794.1 + 23892 0.68 0.608288
Target:  5'- cGCCgagGGCCCGggagccgagugcaGCaGCGugGGCGAgCGAg -3'
miRNA:   3'- aCGG---CCGGGC-------------UGcUGCugCCGCU-GCU- -5'
11090 5' -62 NC_002794.1 + 24014 0.69 0.571377
Target:  5'- cGCCGucaCCG-CGGCGccuCGGCGACGGc -3'
miRNA:   3'- aCGGCcg-GGCuGCUGCu--GCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 24813 0.7 0.497734
Target:  5'- cGUCGGCgCGAcCGACGACGGgucaCGGgGAg -3'
miRNA:   3'- aCGGCCGgGCU-GCUGCUGCC----GCUgCU- -5'
11090 5' -62 NC_002794.1 + 26096 0.67 0.684319
Target:  5'- cGCCgacGGcCCCGGCGAucgcCGugGGCcugccucGACGAc -3'
miRNA:   3'- aCGG---CC-GGGCUGCU----GCugCCG-------CUGCU- -5'
11090 5' -62 NC_002794.1 + 26657 0.71 0.445399
Target:  5'- gGCCGGCUCGu---CGGCGGgGugGAg -3'
miRNA:   3'- aCGGCCGGGCugcuGCUGCCgCugCU- -5'
11090 5' -62 NC_002794.1 + 29913 0.66 0.731755
Target:  5'- ---gGGaCCGACGACgGGCaGCGACGAg -3'
miRNA:   3'- acggCCgGGCUGCUG-CUGcCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 32272 0.73 0.34359
Target:  5'- gGCCGGCCgauCGGCGAgCGACGccgccgccgccGCGGCGGc -3'
miRNA:   3'- aCGGCCGG---GCUGCU-GCUGC-----------CGCUGCU- -5'
11090 5' -62 NC_002794.1 + 32510 0.66 0.722577
Target:  5'- uUGCCGGCucCCGcCG-UGcCGGUGAUGAg -3'
miRNA:   3'- -ACGGCCG--GGCuGCuGCuGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 32613 0.75 0.296131
Target:  5'- gGCCggggaucgGGCCCGcCGACGAagaggggGGCGACGAc -3'
miRNA:   3'- aCGG--------CCGGGCuGCUGCUg------CCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 32868 0.87 0.043253
Target:  5'- aGCCGGCgggCGGCGGCGGCGGCGGCGGc -3'
miRNA:   3'- aCGGCCGg--GCUGCUGCUGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 34053 0.73 0.370803
Target:  5'- gGCCGGCCCG-CGcACGAcccgccguucccgcCGGCGGCc- -3'
miRNA:   3'- aCGGCCGGGCuGC-UGCU--------------GCCGCUGcu -5'
11090 5' -62 NC_002794.1 + 34103 0.66 0.731755
Target:  5'- gGgCGGCCCgGACcGCGACGuccGCGACc- -3'
miRNA:   3'- aCgGCCGGG-CUGcUGCUGC---CGCUGcu -5'
11090 5' -62 NC_002794.1 + 34716 0.67 0.666347
Target:  5'- cGCCGGCgCCacgaggcgcgGGCGgccgcagagcgcGCGACGGCG-CGGu -3'
miRNA:   3'- aCGGCCG-GG----------CUGC------------UGCUGCCGCuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.