miRNA display CGI


Results 21 - 40 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11090 5' -62 NC_002794.1 + 185469 0.67 0.704025
Target:  5'- cGCCG--CgGGCGGCGGCcGCGGCGAg -3'
miRNA:   3'- aCGGCcgGgCUGCUGCUGcCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 185408 0.7 0.543351
Target:  5'- cGCgGGCCCGAccgccgucgacuCGACG-CGGCGccaugcGCGGa -3'
miRNA:   3'- aCGgCCGGGCU------------GCUGCuGCCGC------UGCU- -5'
11090 5' -62 NC_002794.1 + 185172 0.73 0.34359
Target:  5'- cGCCGGCgCGGCG-CGGuCGGCG-CGGu -3'
miRNA:   3'- aCGGCCGgGCUGCuGCU-GCCGCuGCU- -5'
11090 5' -62 NC_002794.1 + 184573 0.73 0.34359
Target:  5'- cGCC-GCCgCGGCGGCGGCGGCcACGc -3'
miRNA:   3'- aCGGcCGG-GCUGCUGCUGCCGcUGCu -5'
11090 5' -62 NC_002794.1 + 184512 0.71 0.471198
Target:  5'- cGCgGGCCCcGCGcGCGGCgcgGGCGACGc -3'
miRNA:   3'- aCGgCCGGGcUGC-UGCUG---CCGCUGCu -5'
11090 5' -62 NC_002794.1 + 184159 0.67 0.717036
Target:  5'- cGCCGGC--GACGGCGucuccacccgacaccGCGGCGcccgGCGAg -3'
miRNA:   3'- aCGGCCGggCUGCUGC---------------UGCCGC----UGCU- -5'
11090 5' -62 NC_002794.1 + 183666 0.71 0.448794
Target:  5'- cGCCgGGCCCGAgcgcCGACGggucgagcgcccgccGCGcGCGGCGGc -3'
miRNA:   3'- aCGG-CCGGGCU----GCUGC---------------UGC-CGCUGCU- -5'
11090 5' -62 NC_002794.1 + 183106 0.66 0.767648
Target:  5'- -uCCGGauCCCGcACGuguuCGGCGGCGGCu- -3'
miRNA:   3'- acGGCC--GGGC-UGCu---GCUGCCGCUGcu -5'
11090 5' -62 NC_002794.1 + 182948 0.74 0.315822
Target:  5'- cGCCgGGCUCGAgcCGACGGCGGcCGGCu- -3'
miRNA:   3'- aCGG-CCGGGCU--GCUGCUGCC-GCUGcu -5'
11090 5' -62 NC_002794.1 + 182559 0.66 0.767648
Target:  5'- gGCCGGCaCCGucacCGG-GAUcuccgugcgGGCGACGAu -3'
miRNA:   3'- aCGGCCG-GGCu---GCUgCUG---------CCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 181751 0.71 0.470326
Target:  5'- gGCCGGCCagcccgcUGACGcCGAUGGCGcCGc -3'
miRNA:   3'- aCGGCCGG-------GCUGCuGCUGCCGCuGCu -5'
11090 5' -62 NC_002794.1 + 181199 0.66 0.729009
Target:  5'- aGUacaGGCCgCGgucuuccgaaagcaGCGACGAgaucCGGCGACGGc -3'
miRNA:   3'- aCGg--CCGG-GC--------------UGCUGCU----GCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 181167 0.71 0.453912
Target:  5'- cGCC-GCgCCGACGGCGAaCGGCgGACa- -3'
miRNA:   3'- aCGGcCG-GGCUGCUGCU-GCCG-CUGcu -5'
11090 5' -62 NC_002794.1 + 180747 0.68 0.609239
Target:  5'- cGuCCGGCUccuCGGCGGCuuCGGCGGCa- -3'
miRNA:   3'- aC-GGCCGG---GCUGCUGcuGCCGCUGcu -5'
11090 5' -62 NC_002794.1 + 180682 0.66 0.722577
Target:  5'- cGCCGGCCgCuccCGGCGccCGGCgGGCGGa -3'
miRNA:   3'- aCGGCCGG-Gcu-GCUGCu-GCCG-CUGCU- -5'
11090 5' -62 NC_002794.1 + 180613 0.71 0.468584
Target:  5'- cGCgGGCCaCGAC-ACGGCGGCccacccgcgcuccaGACGAc -3'
miRNA:   3'- aCGgCCGG-GCUGcUGCUGCCG--------------CUGCU- -5'
11090 5' -62 NC_002794.1 + 180307 0.67 0.704025
Target:  5'- cGCCGG-CCGGCG-CGACca-GACGAu -3'
miRNA:   3'- aCGGCCgGGCUGCuGCUGccgCUGCU- -5'
11090 5' -62 NC_002794.1 + 180005 0.81 0.120039
Target:  5'- gGCgGGCCCGgccACGACGACGGCcGCGGc -3'
miRNA:   3'- aCGgCCGGGC---UGCUGCUGCCGcUGCU- -5'
11090 5' -62 NC_002794.1 + 179869 0.66 0.74086
Target:  5'- cGCCGGUCUGucCGGCGACGGg----- -3'
miRNA:   3'- aCGGCCGGGCu-GCUGCUGCCgcugcu -5'
11090 5' -62 NC_002794.1 + 179667 0.81 0.119748
Target:  5'- cGCCGGacggcacCCgCGGCGGCGACGGUGGCGGc -3'
miRNA:   3'- aCGGCC-------GG-GCUGCUGCUGCCGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.