miRNA display CGI


Results 41 - 60 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11090 5' -62 NC_002794.1 + 70319 0.66 0.767648
Target:  5'- aGCCGcuucGCCCG-CGAaGACGcCGACGGc -3'
miRNA:   3'- aCGGC----CGGGCuGCUgCUGCcGCUGCU- -5'
11090 5' -62 NC_002794.1 + 43857 0.66 0.767648
Target:  5'- cGCuCGGCCCGGgGcACGuagACGGUGA-GAu -3'
miRNA:   3'- aCG-GCCGGGCUgC-UGC---UGCCGCUgCU- -5'
11090 5' -62 NC_002794.1 + 127941 0.66 0.767648
Target:  5'- gUGUCGGUCaugugGACGugGACguGGCuACGAg -3'
miRNA:   3'- -ACGGCCGGg----CUGCugCUG--CCGcUGCU- -5'
11090 5' -62 NC_002794.1 + 135465 0.66 0.767648
Target:  5'- gGCCcGCggCCGACGACGACGccgccguCGACGc -3'
miRNA:   3'- aCGGcCG--GGCUGCUGCUGCc------GCUGCu -5'
11090 5' -62 NC_002794.1 + 109517 0.66 0.767648
Target:  5'- cGcCCGGCCCG-CGcuCGuuCGGCGuCGGg -3'
miRNA:   3'- aC-GGCCGGGCuGCu-GCu-GCCGCuGCU- -5'
11090 5' -62 NC_002794.1 + 108434 0.66 0.758813
Target:  5'- -cCCGcGaCCGGCGGCacucGCGGCGGCGGc -3'
miRNA:   3'- acGGC-CgGGCUGCUGc---UGCCGCUGCU- -5'
11090 5' -62 NC_002794.1 + 109299 0.66 0.758813
Target:  5'- cGCUGGCcaacCCGAcggucuCGACGAUGGCcgGGCGc -3'
miRNA:   3'- aCGGCCG----GGCU------GCUGCUGCCG--CUGCu -5'
11090 5' -62 NC_002794.1 + 38569 0.66 0.749881
Target:  5'- cGCCGGCgCCu-CGACGGaguCGGCcgccuccucccgGACGAg -3'
miRNA:   3'- aCGGCCG-GGcuGCUGCU---GCCG------------CUGCU- -5'
11090 5' -62 NC_002794.1 + 16751 0.66 0.749881
Target:  5'- uUGCCGGCCCcacCGAaaauCGGC-ACGAa -3'
miRNA:   3'- -ACGGCCGGGcu-GCUgcu-GCCGcUGCU- -5'
11090 5' -62 NC_002794.1 + 104774 0.66 0.748983
Target:  5'- cGCCGGCgcuCCGAcacgcCGACaGGCGGUGcugcuucGCGAu -3'
miRNA:   3'- aCGGCCG---GGCU-----GCUG-CUGCCGC-------UGCU- -5'
11090 5' -62 NC_002794.1 + 103573 0.66 0.749881
Target:  5'- cGCCGuGgCCGACGagcaGCGgucgggcaggcaGCGGCGGCa- -3'
miRNA:   3'- aCGGC-CgGGCUGC----UGC------------UGCCGCUGcu -5'
11090 5' -62 NC_002794.1 + 80624 0.66 0.749881
Target:  5'- cUGCCGGCCgaGcACcucGCGAcCGGCGACc- -3'
miRNA:   3'- -ACGGCCGGg-C-UGc--UGCU-GCCGCUGcu -5'
11090 5' -62 NC_002794.1 + 132144 0.66 0.749881
Target:  5'- cGCUgGGCCCGGgGAU--CGGgGACGGu -3'
miRNA:   3'- aCGG-CCGGGCUgCUGcuGCCgCUGCU- -5'
11090 5' -62 NC_002794.1 + 123014 0.66 0.753465
Target:  5'- gGCCGGCuggccgucguguuccCCGACaACGuCGGCGuguACGGc -3'
miRNA:   3'- aCGGCCG---------------GGCUGcUGCuGCCGC---UGCU- -5'
11090 5' -62 NC_002794.1 + 14607 0.66 0.758813
Target:  5'- cGCCgGGCaCCG-CGACGGggcCGGaGACGGg -3'
miRNA:   3'- aCGG-CCG-GGCuGCUGCU---GCCgCUGCU- -5'
11090 5' -62 NC_002794.1 + 14256 0.66 0.758813
Target:  5'- cGCCGGCUCGACccCGACcgaGGUGuuCGGc -3'
miRNA:   3'- aCGGCCGGGCUGcuGCUG---CCGCu-GCU- -5'
11090 5' -62 NC_002794.1 + 106404 0.66 0.758813
Target:  5'- gGUCGGacCCCGGCGGCGcCGG-GGCu- -3'
miRNA:   3'- aCGGCC--GGGCUGCUGCuGCCgCUGcu -5'
11090 5' -62 NC_002794.1 + 51358 0.66 0.756143
Target:  5'- aGCC-GCCCGA-GGCGGCcgccccguccggccGGCGACa- -3'
miRNA:   3'- aCGGcCGGGCUgCUGCUG--------------CCGCUGcu -5'
11090 5' -62 NC_002794.1 + 18249 0.66 0.758813
Target:  5'- cGCgCGGCcgaCCGGCGACcgcgagaugcGCGGCGcCGAg -3'
miRNA:   3'- aCG-GCCG---GGCUGCUGc---------UGCCGCuGCU- -5'
11090 5' -62 NC_002794.1 + 48935 0.66 0.758813
Target:  5'- cGCCaggcGCUCGGCGACcucuucgcaGACGGCGAgcaGAc -3'
miRNA:   3'- aCGGc---CGGGCUGCUG---------CUGCCGCUg--CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.