Results 21 - 40 of 386 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11090 | 5' | -62 | NC_002794.1 | + | 14256 | 0.66 | 0.758813 |
Target: 5'- cGCCGGCUCGACccCGACcgaGGUGuuCGGc -3' miRNA: 3'- aCGGCCGGGCUGcuGCUG---CCGCu-GCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 106404 | 0.66 | 0.758813 |
Target: 5'- gGUCGGacCCCGGCGGCGcCGG-GGCu- -3' miRNA: 3'- aCGGCC--GGGCUGCUGCuGCCgCUGcu -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 78685 | 0.66 | 0.766769 |
Target: 5'- cGCCGGCCgcaugugCGGcCGAC-ACGGCGcCGc -3' miRNA: 3'- aCGGCCGG-------GCU-GCUGcUGCCGCuGCu -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 182559 | 0.66 | 0.767648 |
Target: 5'- gGCCGGCaCCGucacCGG-GAUcuccgugcgGGCGACGAu -3' miRNA: 3'- aCGGCCG-GGCu---GCUgCUG---------CCGCUGCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 146311 | 0.66 | 0.767648 |
Target: 5'- uUGaCgGGCUCGcCGACGcGCGGCGGauuCGAc -3' miRNA: 3'- -AC-GgCCGGGCuGCUGC-UGCCGCU---GCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 70319 | 0.66 | 0.767648 |
Target: 5'- aGCCGcuucGCCCG-CGAaGACGcCGACGGc -3' miRNA: 3'- aCGGC----CGGGCuGCUgCUGCcGCUGCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 43857 | 0.66 | 0.767648 |
Target: 5'- cGCuCGGCCCGGgGcACGuagACGGUGA-GAu -3' miRNA: 3'- aCG-GCCGGGCUgC-UGC---UGCCGCUgCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 127941 | 0.66 | 0.767648 |
Target: 5'- gUGUCGGUCaugugGACGugGACguGGCuACGAg -3' miRNA: 3'- -ACGGCCGGg----CUGCugCUG--CCGcUGCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 135465 | 0.66 | 0.767648 |
Target: 5'- gGCCcGCggCCGACGACGACGccgccguCGACGc -3' miRNA: 3'- aCGGcCG--GGCUGCUGCUGCc------GCUGCu -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 109517 | 0.66 | 0.767648 |
Target: 5'- cGcCCGGCCCG-CGcuCGuuCGGCGuCGGg -3' miRNA: 3'- aC-GGCCGGGCuGCu-GCu-GCCGCuGCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 11381 | 0.66 | 0.767648 |
Target: 5'- aGCCGGCCuCGACccACGcCGGCuACa- -3' miRNA: 3'- aCGGCCGG-GCUGc-UGCuGCCGcUGcu -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 44371 | 0.66 | 0.767648 |
Target: 5'- gGCgGGCgCGACGuccGCGACGcuCGACGc -3' miRNA: 3'- aCGgCCGgGCUGC---UGCUGCc-GCUGCu -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 51358 | 0.66 | 0.756143 |
Target: 5'- aGCC-GCCCGA-GGCGGCcgccccguccggccGGCGACa- -3' miRNA: 3'- aCGGcCGGGCUgCUGCUG--------------CCGCUGcu -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 18249 | 0.66 | 0.758813 |
Target: 5'- cGCgCGGCcgaCCGGCGACcgcgagaugcGCGGCGcCGAg -3' miRNA: 3'- aCG-GCCG---GGCUGCUGc---------UGCCGCuGCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 48935 | 0.66 | 0.758813 |
Target: 5'- cGCCaggcGCUCGGCGACcucuucgcaGACGGCGAgcaGAc -3' miRNA: 3'- aCGGc---CGGGCUGCUG---------CUGCCGCUg--CU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 109299 | 0.66 | 0.758813 |
Target: 5'- cGCUGGCcaacCCGAcggucuCGACGAUGGCcgGGCGc -3' miRNA: 3'- aCGGCCG----GGCU------GCUGCUGCCG--CUGCu -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 108434 | 0.66 | 0.758813 |
Target: 5'- -cCCGcGaCCGGCGGCacucGCGGCGGCGGc -3' miRNA: 3'- acGGC-CgGGCUGCUGc---UGCCGCUGCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 122523 | 0.66 | 0.758813 |
Target: 5'- -uCCGGCCgGAuCGACGACcaGGaCGuCGAg -3' miRNA: 3'- acGGCCGGgCU-GCUGCUG--CC-GCuGCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 67920 | 0.66 | 0.758813 |
Target: 5'- -cCCGGCucuccCCGAgCGACGG-GGCGAUGGc -3' miRNA: 3'- acGGCCG-----GGCU-GCUGCUgCCGCUGCU- -5' |
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11090 | 5' | -62 | NC_002794.1 | + | 70239 | 0.66 | 0.762359 |
Target: 5'- gGCCGGCCgccccgcagcagacgCGcaGCGACGGaGGCcGCGAa -3' miRNA: 3'- aCGGCCGG---------------GC--UGCUGCUgCCGcUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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