miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11091 3' -58.9 NC_002794.1 + 86013 0.66 0.892709
Target:  5'- aCCCGcuggCGCCGAccguGCggCGGACAGGc -3'
miRNA:   3'- -GGGUca--GCGGCUccu-CGa-GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 150424 0.66 0.892709
Target:  5'- gCCCGcGagGCUGGaccuGGAGUcCGGGCGGGu -3'
miRNA:   3'- -GGGU-CagCGGCU----CCUCGaGCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 117866 0.66 0.88629
Target:  5'- gCUGGcgCGCCaGGGAGCUCaGGAUGGu -3'
miRNA:   3'- gGGUCa-GCGGcUCCUCGAG-CCUGUCc -5'
11091 3' -58.9 NC_002794.1 + 104229 0.66 0.88629
Target:  5'- -aCAGgcuuUCGCaCGAGauggagaucuuGAGCUCGGGCAGc -3'
miRNA:   3'- ggGUC----AGCG-GCUC-----------CUCGAGCCUGUCc -5'
11091 3' -58.9 NC_002794.1 + 106217 0.66 0.879668
Target:  5'- gUCCAccGUCGCCGcGGccgcGCUCGGgucGCAGa -3'
miRNA:   3'- -GGGU--CAGCGGCuCCu---CGAGCC---UGUCc -5'
11091 3' -58.9 NC_002794.1 + 53793 0.66 0.879668
Target:  5'- gCCCGGcggguuucUCGgCG-GGAGcCUCGG-CGGGa -3'
miRNA:   3'- -GGGUC--------AGCgGCuCCUC-GAGCCuGUCC- -5'
11091 3' -58.9 NC_002794.1 + 106411 0.66 0.875599
Target:  5'- cCCCGGcggCGCCGGGGcucauGGCgcuguuggagaaggCGGuGCAGGc -3'
miRNA:   3'- -GGGUCa--GCGGCUCC-----UCGa-------------GCC-UGUCC- -5'
11091 3' -58.9 NC_002794.1 + 150607 0.66 0.872155
Target:  5'- gCCGGgCGCCGgcucugcGGGAGCUCGuGAgcCAGu -3'
miRNA:   3'- gGGUCaGCGGC-------UCCUCGAGC-CU--GUCc -5'
11091 3' -58.9 NC_002794.1 + 157193 0.66 0.87146
Target:  5'- gUCGGUCGCCGAuGGAGacagguccgcaCGGACAc- -3'
miRNA:   3'- gGGUCAGCGGCU-CCUCga---------GCCUGUcc -5'
11091 3' -58.9 NC_002794.1 + 139809 0.66 0.865834
Target:  5'- aCCCGGUUGgCGAGGAcCU-GGACGa- -3'
miRNA:   3'- -GGGUCAGCgGCUCCUcGAgCCUGUcc -5'
11091 3' -58.9 NC_002794.1 + 124167 0.66 0.865834
Target:  5'- gCCCGGgagagCGUCGGGGAGg--GGACuGGu -3'
miRNA:   3'- -GGGUCa----GCGGCUCCUCgagCCUGuCC- -5'
11091 3' -58.9 NC_002794.1 + 68846 0.66 0.865122
Target:  5'- uCgCGGUCcCCGAcgaccccGGAGCUCGGGCu-- -3'
miRNA:   3'- -GgGUCAGcGGCU-------CCUCGAGCCUGucc -5'
11091 3' -58.9 NC_002794.1 + 22624 0.66 0.858631
Target:  5'- aUCgGGcCGCuCGAGGcGCUCGGACc-- -3'
miRNA:   3'- -GGgUCaGCG-GCUCCuCGAGCCUGucc -5'
11091 3' -58.9 NC_002794.1 + 105825 0.66 0.858631
Target:  5'- aCCgGGUCgGUCGAGcGAGCg-GGACcgAGGg -3'
miRNA:   3'- -GGgUCAG-CGGCUC-CUCGagCCUG--UCC- -5'
11091 3' -58.9 NC_002794.1 + 182268 0.67 0.85422
Target:  5'- gCCgAGUC-CCGAgcggccucccaugacGGGGCgggUGGACGGGc -3'
miRNA:   3'- -GGgUCAGcGGCU---------------CCUCGa--GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 143327 0.67 0.851243
Target:  5'- gUCGGUCGCgugcuCGGGcagcGGGCUCGGGCgauAGGg -3'
miRNA:   3'- gGGUCAGCG-----GCUC----CUCGAGCCUG---UCC- -5'
11091 3' -58.9 NC_002794.1 + 80400 0.67 0.851243
Target:  5'- aCCUAcUCGCCGcggcccAGGuGGCgcCGGGCGGGg -3'
miRNA:   3'- -GGGUcAGCGGC------UCC-UCGa-GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 85740 0.67 0.851243
Target:  5'- aCCCaAGgacCGCCGAcGGcuuccGCUCGGACAc- -3'
miRNA:   3'- -GGG-UCa--GCGGCU-CCu----CGAGCCUGUcc -5'
11091 3' -58.9 NC_002794.1 + 41672 0.67 0.851243
Target:  5'- aUCgGGcCGCCGcAGGAGCgccCGGACcgccGGa -3'
miRNA:   3'- -GGgUCaGCGGC-UCCUCGa--GCCUGu---CC- -5'
11091 3' -58.9 NC_002794.1 + 146882 0.67 0.843678
Target:  5'- gCgCGGUCgGCCGAugauuauaaaaGGcGCUCGGGCGcGGg -3'
miRNA:   3'- -GgGUCAG-CGGCU-----------CCuCGAGCCUGU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.