miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11091 3' -58.9 NC_002794.1 + 182326 0.67 0.828034
Target:  5'- -gCGGUCgGgCGGGcGGGCgagCGGACGGGc -3'
miRNA:   3'- ggGUCAG-CgGCUC-CUCGa--GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 41672 0.67 0.851243
Target:  5'- aUCgGGcCGCCGcAGGAGCgccCGGACcgccGGa -3'
miRNA:   3'- -GGgUCaGCGGC-UCCUCGa--GCCUGu---CC- -5'
11091 3' -58.9 NC_002794.1 + 143327 0.67 0.851243
Target:  5'- gUCGGUCGCgugcuCGGGcagcGGGCUCGGGCgauAGGg -3'
miRNA:   3'- gGGUCAGCG-----GCUC----CUCGAGCCUG---UCC- -5'
11091 3' -58.9 NC_002794.1 + 182268 0.67 0.85422
Target:  5'- gCCgAGUC-CCGAgcggccucccaugacGGGGCgggUGGACGGGc -3'
miRNA:   3'- -GGgUCAGcGGCU---------------CCUCGa--GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 80400 0.67 0.851243
Target:  5'- aCCUAcUCGCCGcggcccAGGuGGCgcCGGGCGGGg -3'
miRNA:   3'- -GGGUcAGCGGC------UCC-UCGa-GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 85740 0.67 0.851243
Target:  5'- aCCCaAGgacCGCCGAcGGcuuccGCUCGGACAc- -3'
miRNA:   3'- -GGG-UCa--GCGGCU-CCu----CGAGCCUGUcc -5'
11091 3' -58.9 NC_002794.1 + 185261 0.67 0.828034
Target:  5'- gCCAG-CggacgccgccgGCCGAGuGGGCcgcCGGACAGGu -3'
miRNA:   3'- gGGUCaG-----------CGGCUC-CUCGa--GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 146882 0.67 0.843678
Target:  5'- gCgCGGUCgGCCGAugauuauaaaaGGcGCUCGGGCGcGGg -3'
miRNA:   3'- -GgGUCAG-CGGCU-----------CCuCGAGCCUGU-CC- -5'
11091 3' -58.9 NC_002794.1 + 37361 0.68 0.768604
Target:  5'- cCCCAGguaGUCGA--AGCUCGGgcGCAGGc -3'
miRNA:   3'- -GGGUCag-CGGCUccUCGAGCC--UGUCC- -5'
11091 3' -58.9 NC_002794.1 + 115827 0.68 0.7766
Target:  5'- gCCUGGaUCGgCGGGGcccggcgGGCUCGGGCcuGGGa -3'
miRNA:   3'- -GGGUC-AGCgGCUCC-------UCGAGCCUG--UCC- -5'
11091 3' -58.9 NC_002794.1 + 44250 0.68 0.768604
Target:  5'- gCUCGGU-GCCGGGcGGCUCGGccgcCGGGg -3'
miRNA:   3'- -GGGUCAgCGGCUCcUCGAGCCu---GUCC- -5'
11091 3' -58.9 NC_002794.1 + 31866 0.68 0.777483
Target:  5'- aCCCAGUUGUCGAGG-GUgc-GACAGu -3'
miRNA:   3'- -GGGUCAGCGGCUCCuCGagcCUGUCc -5'
11091 3' -58.9 NC_002794.1 + 35154 0.68 0.786244
Target:  5'- cUCguGUCGaCCGAGGAGCaccgcgCGGAguGc -3'
miRNA:   3'- -GGguCAGC-GGCUCCUCGa-----GCCUguCc -5'
11091 3' -58.9 NC_002794.1 + 30080 0.68 0.786244
Target:  5'- gCCCGGUCGaCGAGGcGCgCGGcCGGu -3'
miRNA:   3'- -GGGUCAGCgGCUCCuCGaGCCuGUCc -5'
11091 3' -58.9 NC_002794.1 + 43888 0.68 0.79488
Target:  5'- aCCCGgccGUCGCCggcgucucguGAGGAGCggcgCGGuCAGc -3'
miRNA:   3'- -GGGU---CAGCGG----------CUCCUCGa---GCCuGUCc -5'
11091 3' -58.9 NC_002794.1 + 137569 0.68 0.79488
Target:  5'- gCCGccGUCGCCGccGGGGC-CGGaguGCGGGg -3'
miRNA:   3'- gGGU--CAGCGGCu-CCUCGaGCC---UGUCC- -5'
11091 3' -58.9 NC_002794.1 + 118484 0.68 0.79488
Target:  5'- gCCAGaugaGCCGcAGGuGCUCGuGCGGGc -3'
miRNA:   3'- gGGUCag--CGGC-UCCuCGAGCcUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 191730 0.68 0.79488
Target:  5'- gCCCAcGgacgCGaccuCCGAGGA-CUCGGACAGa -3'
miRNA:   3'- -GGGU-Ca---GC----GGCUCCUcGAGCCUGUCc -5'
11091 3' -58.9 NC_002794.1 + 141389 0.68 0.804228
Target:  5'- gUCC-GUCGuUCGGGGGGCUCGGcgacgacgaugaccuCGGGg -3'
miRNA:   3'- -GGGuCAGC-GGCUCCUCGAGCCu--------------GUCC- -5'
11091 3' -58.9 NC_002794.1 + 137794 0.68 0.768604
Target:  5'- --aGGUCGCUGAGGAGC-C--GCAGGa -3'
miRNA:   3'- gggUCAGCGGCUCCUCGaGccUGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.