miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11091 3' -58.9 NC_002794.1 + 128087 0.77 0.316952
Target:  5'- gCCCgAGUCGgcgaCGGGGAGCUCG-ACGGGg -3'
miRNA:   3'- -GGG-UCAGCg---GCUCCUCGAGCcUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 100524 0.77 0.323876
Target:  5'- aUCCGGUCGgcggcaCCGAGGAGCagCGGGCGGc -3'
miRNA:   3'- -GGGUCAGC------GGCUCCUCGa-GCCUGUCc -5'
11091 3' -58.9 NC_002794.1 + 43345 0.76 0.345322
Target:  5'- gCCGGUUGaaguCCGAGuGcGGCUCGGACAGGc -3'
miRNA:   3'- gGGUCAGC----GGCUC-C-UCGAGCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 44220 0.76 0.367767
Target:  5'- gCUCGGgCGCCGAGG-GCUCGGugcCGGGc -3'
miRNA:   3'- -GGGUCaGCGGCUCCuCGAGCCu--GUCC- -5'
11091 3' -58.9 NC_002794.1 + 35991 0.76 0.360175
Target:  5'- aCCCGGUuuuauUGUCGcGGGGCUCGGGCGGcGg -3'
miRNA:   3'- -GGGUCA-----GCGGCuCCUCGAGCCUGUC-C- -5'
11091 3' -58.9 NC_002794.1 + 71098 0.74 0.475894
Target:  5'- gCCGGUCGCCGGcGGccuGGC-CGGAgAGGc -3'
miRNA:   3'- gGGUCAGCGGCU-CC---UCGaGCCUgUCC- -5'
11091 3' -58.9 NC_002794.1 + 143276 0.73 0.503051
Target:  5'- gCCCGG-CGCCGGccgcucGGGG-UCGGGCGGGu -3'
miRNA:   3'- -GGGUCaGCGGCU------CCUCgAGCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 115952 0.73 0.493921
Target:  5'- gCguGUCGCCGgggaccguggggGGGAGCg-GGACGGGg -3'
miRNA:   3'- gGguCAGCGGC------------UCCUCGagCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 141594 0.73 0.493921
Target:  5'- gCCCGcGUCGCCGGGcGGCUCGGcgACcGGc -3'
miRNA:   3'- -GGGU-CAGCGGCUCcUCGAGCC--UGuCC- -5'
11091 3' -58.9 NC_002794.1 + 99251 0.72 0.578345
Target:  5'- aCCCcGcCGCgGAGGGGCUCGG--GGGc -3'
miRNA:   3'- -GGGuCaGCGgCUCCUCGAGCCugUCC- -5'
11091 3' -58.9 NC_002794.1 + 107212 0.72 0.578345
Target:  5'- gCCCGG-CGCCGccGGGCggcgCGcGACGGGg -3'
miRNA:   3'- -GGGUCaGCGGCucCUCGa---GC-CUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 115614 0.71 0.636387
Target:  5'- gCCCGG-CGCCG-GGAGg-CGGGuCAGGu -3'
miRNA:   3'- -GGGUCaGCGGCuCCUCgaGCCU-GUCC- -5'
11091 3' -58.9 NC_002794.1 + 32722 0.71 0.633476
Target:  5'- aCCC-GUCGgCGGGGAGUagucgucgaaauacUCGGAguGGu -3'
miRNA:   3'- -GGGuCAGCgGCUCCUCG--------------AGCCUguCC- -5'
11091 3' -58.9 NC_002794.1 + 96554 0.71 0.597618
Target:  5'- aCCGGUCGaCGAGGAGCgggagCGG-CuGGu -3'
miRNA:   3'- gGGUCAGCgGCUCCUCGa----GCCuGuCC- -5'
11091 3' -58.9 NC_002794.1 + 101271 0.7 0.675104
Target:  5'- cCCCGG-CGCCGGuGGcGGCggCGGGgAGGa -3'
miRNA:   3'- -GGGUCaGCGGCU-CC-UCGa-GCCUgUCC- -5'
11091 3' -58.9 NC_002794.1 + 73129 0.7 0.665454
Target:  5'- cCCCcGagGCCGAGGAGCUCaugcGACAc- -3'
miRNA:   3'- -GGGuCagCGGCUCCUCGAGc---CUGUcc -5'
11091 3' -58.9 NC_002794.1 + 150030 0.7 0.69239
Target:  5'- aCCCGGcCGCCGAguGGAGCcgcuaccgacugCGGugGGa -3'
miRNA:   3'- -GGGUCaGCGGCU--CCUCGa-----------GCCugUCc -5'
11091 3' -58.9 NC_002794.1 + 70210 0.7 0.694303
Target:  5'- aUCCAGcUCGCCc-GGAcGgUCGGGCGGGc -3'
miRNA:   3'- -GGGUC-AGCGGcuCCU-CgAGCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 140197 0.7 0.65578
Target:  5'- ---cGUCGUCGAGGGGCgaccCGGGCcGGa -3'
miRNA:   3'- ggguCAGCGGCUCCUCGa---GCCUGuCC- -5'
11091 3' -58.9 NC_002794.1 + 115251 0.7 0.675104
Target:  5'- gUCCAcGUCGUCG-GG-GCUCaGGCAGGu -3'
miRNA:   3'- -GGGU-CAGCGGCuCCuCGAGcCUGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.