miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11091 3' -58.9 NC_002794.1 + 115251 0.7 0.675104
Target:  5'- gUCCAcGUCGUCG-GG-GCUCaGGCAGGu -3'
miRNA:   3'- -GGGU-CAGCGGCuCCuCGAGcCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 134000 0.69 0.703835
Target:  5'- gUCGGUCGCCGGGugcGAGCgcugcaCGGuCGGGu -3'
miRNA:   3'- gGGUCAGCGGCUC---CUCGa-----GCCuGUCC- -5'
11091 3' -58.9 NC_002794.1 + 68745 0.69 0.750527
Target:  5'- cCCCGGagGCCGAcuGAGC-CGGGCcgccGGGg -3'
miRNA:   3'- -GGGUCagCGGCUc-CUCGaGCCUG----UCC- -5'
11091 3' -58.9 NC_002794.1 + 135867 0.69 0.713314
Target:  5'- gCCCAGaaaGCCGAcGAGguccCUCGGACAGcGg -3'
miRNA:   3'- -GGGUCag-CGGCUcCUC----GAGCCUGUC-C- -5'
11091 3' -58.9 NC_002794.1 + 144297 0.69 0.732076
Target:  5'- aCCCGGUgGaCGAGGAGgaCGGGCcGa -3'
miRNA:   3'- -GGGUCAgCgGCUCCUCgaGCCUGuCc -5'
11091 3' -58.9 NC_002794.1 + 34836 0.69 0.72273
Target:  5'- gCCGG-CGCCgGAGcGGGCgUCGGAgCGGGc -3'
miRNA:   3'- gGGUCaGCGG-CUC-CUCG-AGCCU-GUCC- -5'
11091 3' -58.9 NC_002794.1 + 115553 0.69 0.750527
Target:  5'- gCUCGGgggaguaGCCGAGcAGCUCGGcgaACGGGa -3'
miRNA:   3'- -GGGUCag-----CGGCUCcUCGAGCC---UGUCC- -5'
11091 3' -58.9 NC_002794.1 + 128922 0.69 0.726477
Target:  5'- aCCUGGUCGCCGAcgacgaacguccgguGGAGCcugcgcCGGACGa- -3'
miRNA:   3'- -GGGUCAGCGGCU---------------CCUCGa-----GCCUGUcc -5'
11091 3' -58.9 NC_002794.1 + 50911 0.69 0.713314
Target:  5'- cUCCAGcUGCC--GGAGCUCGGACucgcccgcGGGa -3'
miRNA:   3'- -GGGUCaGCGGcuCCUCGAGCCUG--------UCC- -5'
11091 3' -58.9 NC_002794.1 + 44637 0.69 0.713314
Target:  5'- uCCguGUcCGCCGcAGGAuGUUCGGucgACAGGu -3'
miRNA:   3'- -GGguCA-GCGGC-UCCU-CGAGCC---UGUCC- -5'
11091 3' -58.9 NC_002794.1 + 103574 0.69 0.732076
Target:  5'- gCC-GUgGCCGAcGAGCagcggUCGGGCAGGc -3'
miRNA:   3'- gGGuCAgCGGCUcCUCG-----AGCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 101580 0.69 0.725542
Target:  5'- gCCGGcCGCCGcggccggGGGGGCgggugccggcccgcCGGGCGGGg -3'
miRNA:   3'- gGGUCaGCGGC-------UCCUCGa-------------GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 191730 0.68 0.79488
Target:  5'- gCCCAcGgacgCGaccuCCGAGGA-CUCGGACAGa -3'
miRNA:   3'- -GGGU-Ca---GC----GGCUCCUcGAGCCUGUCc -5'
11091 3' -58.9 NC_002794.1 + 141389 0.68 0.804228
Target:  5'- gUCC-GUCGuUCGGGGGGCUCGGcgacgacgaugaccuCGGGg -3'
miRNA:   3'- -GGGuCAGC-GGCUCCUCGAGCCu--------------GUCC- -5'
11091 3' -58.9 NC_002794.1 + 141442 0.68 0.803385
Target:  5'- gCCGGgggCGCCG-GGAGCggcgcggcgucCGGACuGGc -3'
miRNA:   3'- gGGUCa--GCGGCuCCUCGa----------GCCUGuCC- -5'
11091 3' -58.9 NC_002794.1 + 35154 0.68 0.786244
Target:  5'- cUCguGUCGaCCGAGGAGCaccgcgCGGAguGc -3'
miRNA:   3'- -GGguCAGC-GGCUCCUCGa-----GCCUguCc -5'
11091 3' -58.9 NC_002794.1 + 31866 0.68 0.777483
Target:  5'- aCCCAGUUGUCGAGG-GUgc-GACAGu -3'
miRNA:   3'- -GGGUCAGCGGCUCCuCGagcCUGUCc -5'
11091 3' -58.9 NC_002794.1 + 44250 0.68 0.768604
Target:  5'- gCUCGGU-GCCGGGcGGCUCGGccgcCGGGg -3'
miRNA:   3'- -GGGUCAgCGGCUCcUCGAGCCu---GUCC- -5'
11091 3' -58.9 NC_002794.1 + 115827 0.68 0.7766
Target:  5'- gCCUGGaUCGgCGGGGcccggcgGGCUCGGGCcuGGGa -3'
miRNA:   3'- -GGGUC-AGCgGCUCC-------UCGAGCCUG--UCC- -5'
11091 3' -58.9 NC_002794.1 + 37361 0.68 0.768604
Target:  5'- cCCCAGguaGUCGA--AGCUCGGgcGCAGGc -3'
miRNA:   3'- -GGGUCag-CGGCUccUCGAGCC--UGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.