Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11091 | 3' | -58.9 | NC_002794.1 | + | 70210 | 0.7 | 0.694303 |
Target: 5'- aUCCAGcUCGCCc-GGAcGgUCGGGCGGGc -3' miRNA: 3'- -GGGUC-AGCGGcuCCU-CgAGCCUGUCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 134000 | 0.69 | 0.703835 |
Target: 5'- gUCGGUCGCCGGGugcGAGCgcugcaCGGuCGGGu -3' miRNA: 3'- gGGUCAGCGGCUC---CUCGa-----GCCuGUCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 44637 | 0.69 | 0.713314 |
Target: 5'- uCCguGUcCGCCGcAGGAuGUUCGGucgACAGGu -3' miRNA: 3'- -GGguCA-GCGGC-UCCU-CGAGCC---UGUCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 50911 | 0.69 | 0.713314 |
Target: 5'- cUCCAGcUGCC--GGAGCUCGGACucgcccgcGGGa -3' miRNA: 3'- -GGGUCaGCGGcuCCUCGAGCCUG--------UCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 135867 | 0.69 | 0.713314 |
Target: 5'- gCCCAGaaaGCCGAcGAGguccCUCGGACAGcGg -3' miRNA: 3'- -GGGUCag-CGGCUcCUC----GAGCCUGUC-C- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 34836 | 0.69 | 0.72273 |
Target: 5'- gCCGG-CGCCgGAGcGGGCgUCGGAgCGGGc -3' miRNA: 3'- gGGUCaGCGG-CUC-CUCG-AGCCU-GUCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 101580 | 0.69 | 0.725542 |
Target: 5'- gCCGGcCGCCGcggccggGGGGGCgggugccggcccgcCGGGCGGGg -3' miRNA: 3'- gGGUCaGCGGC-------UCCUCGa-------------GCCUGUCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 128922 | 0.69 | 0.726477 |
Target: 5'- aCCUGGUCGCCGAcgacgaacguccgguGGAGCcugcgcCGGACGa- -3' miRNA: 3'- -GGGUCAGCGGCU---------------CCUCGa-----GCCUGUcc -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 103574 | 0.69 | 0.732076 |
Target: 5'- gCC-GUgGCCGAcGAGCagcggUCGGGCAGGc -3' miRNA: 3'- gGGuCAgCGGCUcCUCG-----AGCCUGUCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 144297 | 0.69 | 0.732076 |
Target: 5'- aCCCGGUgGaCGAGGAGgaCGGGCcGa -3' miRNA: 3'- -GGGUCAgCgGCUCCUCgaGCCUGuCc -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 68745 | 0.69 | 0.750527 |
Target: 5'- cCCCGGagGCCGAcuGAGC-CGGGCcgccGGGg -3' miRNA: 3'- -GGGUCagCGGCUc-CUCGaGCCUG----UCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 115553 | 0.69 | 0.750527 |
Target: 5'- gCUCGGgggaguaGCCGAGcAGCUCGGcgaACGGGa -3' miRNA: 3'- -GGGUCag-----CGGCUCcUCGAGCC---UGUCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 149651 | 0.68 | 0.759616 |
Target: 5'- -gCGGuUCGCCGAGGAGgC-CGaGCGGGg -3' miRNA: 3'- ggGUC-AGCGGCUCCUC-GaGCcUGUCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 137794 | 0.68 | 0.768604 |
Target: 5'- --aGGUCGCUGAGGAGC-C--GCAGGa -3' miRNA: 3'- gggUCAGCGGCUCCUCGaGccUGUCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 44250 | 0.68 | 0.768604 |
Target: 5'- gCUCGGU-GCCGGGcGGCUCGGccgcCGGGg -3' miRNA: 3'- -GGGUCAgCGGCUCcUCGAGCCu---GUCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 37361 | 0.68 | 0.768604 |
Target: 5'- cCCCAGguaGUCGA--AGCUCGGgcGCAGGc -3' miRNA: 3'- -GGGUCag-CGGCUccUCGAGCC--UGUCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 115827 | 0.68 | 0.7766 |
Target: 5'- gCCUGGaUCGgCGGGGcccggcgGGCUCGGGCcuGGGa -3' miRNA: 3'- -GGGUC-AGCgGCUCC-------UCGAGCCUG--UCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 31866 | 0.68 | 0.777483 |
Target: 5'- aCCCAGUUGUCGAGG-GUgc-GACAGu -3' miRNA: 3'- -GGGUCAGCGGCUCCuCGagcCUGUCc -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 30080 | 0.68 | 0.786244 |
Target: 5'- gCCCGGUCGaCGAGGcGCgCGGcCGGu -3' miRNA: 3'- -GGGUCAGCgGCUCCuCGaGCCuGUCc -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 35154 | 0.68 | 0.786244 |
Target: 5'- cUCguGUCGaCCGAGGAGCaccgcgCGGAguGc -3' miRNA: 3'- -GGguCAGC-GGCUCCUCGa-----GCCUguCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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