miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11091 3' -58.9 NC_002794.1 + 191730 0.68 0.79488
Target:  5'- gCCCAcGgacgCGaccuCCGAGGA-CUCGGACAGa -3'
miRNA:   3'- -GGGU-Ca---GC----GGCUCCUcGAGCCUGUCc -5'
11091 3' -58.9 NC_002794.1 + 118484 0.68 0.79488
Target:  5'- gCCAGaugaGCCGcAGGuGCUCGuGCGGGc -3'
miRNA:   3'- gGGUCag--CGGC-UCCuCGAGCcUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 137569 0.68 0.79488
Target:  5'- gCCGccGUCGCCGccGGGGC-CGGaguGCGGGg -3'
miRNA:   3'- gGGU--CAGCGGCu-CCUCGaGCC---UGUCC- -5'
11091 3' -58.9 NC_002794.1 + 43888 0.68 0.79488
Target:  5'- aCCCGgccGUCGCCggcgucucguGAGGAGCggcgCGGuCAGc -3'
miRNA:   3'- -GGGU---CAGCGG----------CUCCUCGa---GCCuGUCc -5'
11091 3' -58.9 NC_002794.1 + 141442 0.68 0.803385
Target:  5'- gCCGGgggCGCCG-GGAGCggcgcggcgucCGGACuGGc -3'
miRNA:   3'- gGGUCa--GCGGCuCCUCGa----------GCCUGuCC- -5'
11091 3' -58.9 NC_002794.1 + 141389 0.68 0.804228
Target:  5'- gUCC-GUCGuUCGGGGGGCUCGGcgacgacgaugaccuCGGGg -3'
miRNA:   3'- -GGGuCAGC-GGCUCCUCGAGCCu--------------GUCC- -5'
11091 3' -58.9 NC_002794.1 + 50601 0.67 0.811751
Target:  5'- gCCGG-CGCCGGGGGGaUCGaGACGa- -3'
miRNA:   3'- gGGUCaGCGGCUCCUCgAGC-CUGUcc -5'
11091 3' -58.9 NC_002794.1 + 44420 0.67 0.811751
Target:  5'- gCCGG-CGCCGAGcGGCUCGacGACAccGGc -3'
miRNA:   3'- gGGUCaGCGGCUCcUCGAGC--CUGU--CC- -5'
11091 3' -58.9 NC_002794.1 + 41858 0.67 0.811751
Target:  5'- cCCCAGgcCGCCGGGcaGGGC-CGGGCGc- -3'
miRNA:   3'- -GGGUCa-GCGGCUC--CUCGaGCCUGUcc -5'
11091 3' -58.9 NC_002794.1 + 142903 0.67 0.819969
Target:  5'- gCCCGG-CGUCcuccGGGGGC-CGGAgCAGGa -3'
miRNA:   3'- -GGGUCaGCGGc---UCCUCGaGCCU-GUCC- -5'
11091 3' -58.9 NC_002794.1 + 149595 0.67 0.819969
Target:  5'- gCCAgGUgGaCCGAGGAGCccCcGACGGGg -3'
miRNA:   3'- gGGU-CAgC-GGCUCCUCGa-GcCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 185261 0.67 0.828034
Target:  5'- gCCAG-CggacgccgccgGCCGAGuGGGCcgcCGGACAGGu -3'
miRNA:   3'- gGGUCaG-----------CGGCUC-CUCGa--GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 182326 0.67 0.828034
Target:  5'- -gCGGUCgGgCGGGcGGGCgagCGGACGGGc -3'
miRNA:   3'- ggGUCAG-CgGCUC-CUCGa--GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 95844 0.67 0.828034
Target:  5'- -gCGG-CgGCCGGGGAgGCggCGGGCGGGc -3'
miRNA:   3'- ggGUCaG-CGGCUCCU-CGa-GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 146882 0.67 0.843678
Target:  5'- gCgCGGUCgGCCGAugauuauaaaaGGcGCUCGGGCGcGGg -3'
miRNA:   3'- -GgGUCAG-CGGCU-----------CCuCGAGCCUGU-CC- -5'
11091 3' -58.9 NC_002794.1 + 41672 0.67 0.851243
Target:  5'- aUCgGGcCGCCGcAGGAGCgccCGGACcgccGGa -3'
miRNA:   3'- -GGgUCaGCGGC-UCCUCGa--GCCUGu---CC- -5'
11091 3' -58.9 NC_002794.1 + 80400 0.67 0.851243
Target:  5'- aCCUAcUCGCCGcggcccAGGuGGCgcCGGGCGGGg -3'
miRNA:   3'- -GGGUcAGCGGC------UCC-UCGa-GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 143327 0.67 0.851243
Target:  5'- gUCGGUCGCgugcuCGGGcagcGGGCUCGGGCgauAGGg -3'
miRNA:   3'- gGGUCAGCG-----GCUC----CUCGAGCCUG---UCC- -5'
11091 3' -58.9 NC_002794.1 + 85740 0.67 0.851243
Target:  5'- aCCCaAGgacCGCCGAcGGcuuccGCUCGGACAc- -3'
miRNA:   3'- -GGG-UCa--GCGGCU-CCu----CGAGCCUGUcc -5'
11091 3' -58.9 NC_002794.1 + 182268 0.67 0.85422
Target:  5'- gCCgAGUC-CCGAgcggccucccaugacGGGGCgggUGGACGGGc -3'
miRNA:   3'- -GGgUCAGcGGCU---------------CCUCGa--GCCUGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.