miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11091 3' -58.9 NC_002794.1 + 22624 0.66 0.858631
Target:  5'- aUCgGGcCGCuCGAGGcGCUCGGACc-- -3'
miRNA:   3'- -GGgUCaGCG-GCUCCuCGAGCCUGucc -5'
11091 3' -58.9 NC_002794.1 + 30080 0.68 0.786244
Target:  5'- gCCCGGUCGaCGAGGcGCgCGGcCGGu -3'
miRNA:   3'- -GGGUCAGCgGCUCCuCGaGCCuGUCc -5'
11091 3' -58.9 NC_002794.1 + 31866 0.68 0.777483
Target:  5'- aCCCAGUUGUCGAGG-GUgc-GACAGu -3'
miRNA:   3'- -GGGUCAGCGGCUCCuCGagcCUGUCc -5'
11091 3' -58.9 NC_002794.1 + 32722 0.71 0.633476
Target:  5'- aCCC-GUCGgCGGGGAGUagucgucgaaauacUCGGAguGGu -3'
miRNA:   3'- -GGGuCAGCgGCUCCUCG--------------AGCCUguCC- -5'
11091 3' -58.9 NC_002794.1 + 34836 0.69 0.72273
Target:  5'- gCCGG-CGCCgGAGcGGGCgUCGGAgCGGGc -3'
miRNA:   3'- gGGUCaGCGG-CUC-CUCG-AGCCU-GUCC- -5'
11091 3' -58.9 NC_002794.1 + 35154 0.68 0.786244
Target:  5'- cUCguGUCGaCCGAGGAGCaccgcgCGGAguGc -3'
miRNA:   3'- -GGguCAGC-GGCUCCUCGa-----GCCUguCc -5'
11091 3' -58.9 NC_002794.1 + 35991 0.76 0.360175
Target:  5'- aCCCGGUuuuauUGUCGcGGGGCUCGGGCGGcGg -3'
miRNA:   3'- -GGGUCA-----GCGGCuCCUCGAGCCUGUC-C- -5'
11091 3' -58.9 NC_002794.1 + 37361 0.68 0.768604
Target:  5'- cCCCAGguaGUCGA--AGCUCGGgcGCAGGc -3'
miRNA:   3'- -GGGUCag-CGGCUccUCGAGCC--UGUCC- -5'
11091 3' -58.9 NC_002794.1 + 41672 0.67 0.851243
Target:  5'- aUCgGGcCGCCGcAGGAGCgccCGGACcgccGGa -3'
miRNA:   3'- -GGgUCaGCGGC-UCCUCGa--GCCUGu---CC- -5'
11091 3' -58.9 NC_002794.1 + 41858 0.67 0.811751
Target:  5'- cCCCAGgcCGCCGGGcaGGGC-CGGGCGc- -3'
miRNA:   3'- -GGGUCa-GCGGCUC--CUCGaGCCUGUcc -5'
11091 3' -58.9 NC_002794.1 + 43345 0.76 0.345322
Target:  5'- gCCGGUUGaaguCCGAGuGcGGCUCGGACAGGc -3'
miRNA:   3'- gGGUCAGC----GGCUC-C-UCGAGCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 43888 0.68 0.79488
Target:  5'- aCCCGgccGUCGCCggcgucucguGAGGAGCggcgCGGuCAGc -3'
miRNA:   3'- -GGGU---CAGCGG----------CUCCUCGa---GCCuGUCc -5'
11091 3' -58.9 NC_002794.1 + 44220 0.76 0.367767
Target:  5'- gCUCGGgCGCCGAGG-GCUCGGugcCGGGc -3'
miRNA:   3'- -GGGUCaGCGGCUCCuCGAGCCu--GUCC- -5'
11091 3' -58.9 NC_002794.1 + 44250 0.68 0.768604
Target:  5'- gCUCGGU-GCCGGGcGGCUCGGccgcCGGGg -3'
miRNA:   3'- -GGGUCAgCGGCUCcUCGAGCCu---GUCC- -5'
11091 3' -58.9 NC_002794.1 + 44420 0.67 0.811751
Target:  5'- gCCGG-CGCCGAGcGGCUCGacGACAccGGc -3'
miRNA:   3'- gGGUCaGCGGCUCcUCGAGC--CUGU--CC- -5'
11091 3' -58.9 NC_002794.1 + 44637 0.69 0.713314
Target:  5'- uCCguGUcCGCCGcAGGAuGUUCGGucgACAGGu -3'
miRNA:   3'- -GGguCA-GCGGC-UCCU-CGAGCC---UGUCC- -5'
11091 3' -58.9 NC_002794.1 + 50601 0.67 0.811751
Target:  5'- gCCGG-CGCCGGGGGGaUCGaGACGa- -3'
miRNA:   3'- gGGUCaGCGGCUCCUCgAGC-CUGUcc -5'
11091 3' -58.9 NC_002794.1 + 50911 0.69 0.713314
Target:  5'- cUCCAGcUGCC--GGAGCUCGGACucgcccgcGGGa -3'
miRNA:   3'- -GGGUCaGCGGcuCCUCGAGCCUG--------UCC- -5'
11091 3' -58.9 NC_002794.1 + 53793 0.66 0.879668
Target:  5'- gCCCGGcggguuucUCGgCG-GGAGcCUCGG-CGGGa -3'
miRNA:   3'- -GGGUC--------AGCgGCuCCUC-GAGCCuGUCC- -5'
11091 3' -58.9 NC_002794.1 + 68745 0.69 0.750527
Target:  5'- cCCCGGagGCCGAcuGAGC-CGGGCcgccGGGg -3'
miRNA:   3'- -GGGUCagCGGCUc-CUCGaGCCUG----UCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.