miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11091 3' -58.9 NC_002794.1 + 68846 0.66 0.865122
Target:  5'- uCgCGGUCcCCGAcgaccccGGAGCUCGGGCu-- -3'
miRNA:   3'- -GgGUCAGcGGCU-------CCUCGAGCCUGucc -5'
11091 3' -58.9 NC_002794.1 + 70210 0.7 0.694303
Target:  5'- aUCCAGcUCGCCc-GGAcGgUCGGGCGGGc -3'
miRNA:   3'- -GGGUC-AGCGGcuCCU-CgAGCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 71098 0.74 0.475894
Target:  5'- gCCGGUCGCCGGcGGccuGGC-CGGAgAGGc -3'
miRNA:   3'- gGGUCAGCGGCU-CC---UCGaGCCUgUCC- -5'
11091 3' -58.9 NC_002794.1 + 73129 0.7 0.665454
Target:  5'- cCCCcGagGCCGAGGAGCUCaugcGACAc- -3'
miRNA:   3'- -GGGuCagCGGCUCCUCGAGc---CUGUcc -5'
11091 3' -58.9 NC_002794.1 + 80400 0.67 0.851243
Target:  5'- aCCUAcUCGCCGcggcccAGGuGGCgcCGGGCGGGg -3'
miRNA:   3'- -GGGUcAGCGGC------UCC-UCGa-GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 85740 0.67 0.851243
Target:  5'- aCCCaAGgacCGCCGAcGGcuuccGCUCGGACAc- -3'
miRNA:   3'- -GGG-UCa--GCGGCU-CCu----CGAGCCUGUcc -5'
11091 3' -58.9 NC_002794.1 + 86013 0.66 0.892709
Target:  5'- aCCCGcuggCGCCGAccguGCggCGGACAGGc -3'
miRNA:   3'- -GGGUca--GCGGCUccu-CGa-GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 95844 0.67 0.828034
Target:  5'- -gCGG-CgGCCGGGGAgGCggCGGGCGGGc -3'
miRNA:   3'- ggGUCaG-CGGCUCCU-CGa-GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 96554 0.71 0.597618
Target:  5'- aCCGGUCGaCGAGGAGCgggagCGG-CuGGu -3'
miRNA:   3'- gGGUCAGCgGCUCCUCGa----GCCuGuCC- -5'
11091 3' -58.9 NC_002794.1 + 99251 0.72 0.578345
Target:  5'- aCCCcGcCGCgGAGGGGCUCGG--GGGc -3'
miRNA:   3'- -GGGuCaGCGgCUCCUCGAGCCugUCC- -5'
11091 3' -58.9 NC_002794.1 + 100524 0.77 0.323876
Target:  5'- aUCCGGUCGgcggcaCCGAGGAGCagCGGGCGGc -3'
miRNA:   3'- -GGGUCAGC------GGCUCCUCGa-GCCUGUCc -5'
11091 3' -58.9 NC_002794.1 + 101271 0.7 0.675104
Target:  5'- cCCCGG-CGCCGGuGGcGGCggCGGGgAGGa -3'
miRNA:   3'- -GGGUCaGCGGCU-CC-UCGa-GCCUgUCC- -5'
11091 3' -58.9 NC_002794.1 + 101580 0.69 0.725542
Target:  5'- gCCGGcCGCCGcggccggGGGGGCgggugccggcccgcCGGGCGGGg -3'
miRNA:   3'- gGGUCaGCGGC-------UCCUCGa-------------GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 103574 0.69 0.732076
Target:  5'- gCC-GUgGCCGAcGAGCagcggUCGGGCAGGc -3'
miRNA:   3'- gGGuCAgCGGCUcCUCG-----AGCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 104229 0.66 0.88629
Target:  5'- -aCAGgcuuUCGCaCGAGauggagaucuuGAGCUCGGGCAGc -3'
miRNA:   3'- ggGUC----AGCG-GCUC-----------CUCGAGCCUGUCc -5'
11091 3' -58.9 NC_002794.1 + 105825 0.66 0.858631
Target:  5'- aCCgGGUCgGUCGAGcGAGCg-GGACcgAGGg -3'
miRNA:   3'- -GGgUCAG-CGGCUC-CUCGagCCUG--UCC- -5'
11091 3' -58.9 NC_002794.1 + 106217 0.66 0.879668
Target:  5'- gUCCAccGUCGCCGcGGccgcGCUCGGgucGCAGa -3'
miRNA:   3'- -GGGU--CAGCGGCuCCu---CGAGCC---UGUCc -5'
11091 3' -58.9 NC_002794.1 + 106411 0.66 0.875599
Target:  5'- cCCCGGcggCGCCGGGGcucauGGCgcuguuggagaaggCGGuGCAGGc -3'
miRNA:   3'- -GGGUCa--GCGGCUCC-----UCGa-------------GCC-UGUCC- -5'
11091 3' -58.9 NC_002794.1 + 107212 0.72 0.578345
Target:  5'- gCCCGG-CGCCGccGGGCggcgCGcGACGGGg -3'
miRNA:   3'- -GGGUCaGCGGCucCUCGa---GC-CUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 115251 0.7 0.675104
Target:  5'- gUCCAcGUCGUCG-GG-GCUCaGGCAGGu -3'
miRNA:   3'- -GGGU-CAGCGGCuCCuCGAGcCUGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.