miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11091 3' -58.9 NC_002794.1 + 115553 0.69 0.750527
Target:  5'- gCUCGGgggaguaGCCGAGcAGCUCGGcgaACGGGa -3'
miRNA:   3'- -GGGUCag-----CGGCUCcUCGAGCC---UGUCC- -5'
11091 3' -58.9 NC_002794.1 + 115614 0.71 0.636387
Target:  5'- gCCCGG-CGCCG-GGAGg-CGGGuCAGGu -3'
miRNA:   3'- -GGGUCaGCGGCuCCUCgaGCCU-GUCC- -5'
11091 3' -58.9 NC_002794.1 + 115827 0.68 0.7766
Target:  5'- gCCUGGaUCGgCGGGGcccggcgGGCUCGGGCcuGGGa -3'
miRNA:   3'- -GGGUC-AGCgGCUCC-------UCGAGCCUG--UCC- -5'
11091 3' -58.9 NC_002794.1 + 115952 0.73 0.493921
Target:  5'- gCguGUCGCCGgggaccguggggGGGAGCg-GGACGGGg -3'
miRNA:   3'- gGguCAGCGGC------------UCCUCGagCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 117866 0.66 0.88629
Target:  5'- gCUGGcgCGCCaGGGAGCUCaGGAUGGu -3'
miRNA:   3'- gGGUCa-GCGGcUCCUCGAG-CCUGUCc -5'
11091 3' -58.9 NC_002794.1 + 118484 0.68 0.79488
Target:  5'- gCCAGaugaGCCGcAGGuGCUCGuGCGGGc -3'
miRNA:   3'- gGGUCag--CGGC-UCCuCGAGCcUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 124167 0.66 0.865834
Target:  5'- gCCCGGgagagCGUCGGGGAGg--GGACuGGu -3'
miRNA:   3'- -GGGUCa----GCGGCUCCUCgagCCUGuCC- -5'
11091 3' -58.9 NC_002794.1 + 128087 0.77 0.316952
Target:  5'- gCCCgAGUCGgcgaCGGGGAGCUCG-ACGGGg -3'
miRNA:   3'- -GGG-UCAGCg---GCUCCUCGAGCcUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 128922 0.69 0.726477
Target:  5'- aCCUGGUCGCCGAcgacgaacguccgguGGAGCcugcgcCGGACGa- -3'
miRNA:   3'- -GGGUCAGCGGCU---------------CCUCGa-----GCCUGUcc -5'
11091 3' -58.9 NC_002794.1 + 134000 0.69 0.703835
Target:  5'- gUCGGUCGCCGGGugcGAGCgcugcaCGGuCGGGu -3'
miRNA:   3'- gGGUCAGCGGCUC---CUCGa-----GCCuGUCC- -5'
11091 3' -58.9 NC_002794.1 + 135867 0.69 0.713314
Target:  5'- gCCCAGaaaGCCGAcGAGguccCUCGGACAGcGg -3'
miRNA:   3'- -GGGUCag-CGGCUcCUC----GAGCCUGUC-C- -5'
11091 3' -58.9 NC_002794.1 + 137569 0.68 0.79488
Target:  5'- gCCGccGUCGCCGccGGGGC-CGGaguGCGGGg -3'
miRNA:   3'- gGGU--CAGCGGCu-CCUCGaGCC---UGUCC- -5'
11091 3' -58.9 NC_002794.1 + 137794 0.68 0.768604
Target:  5'- --aGGUCGCUGAGGAGC-C--GCAGGa -3'
miRNA:   3'- gggUCAGCGGCUCCUCGaGccUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 139809 0.66 0.865834
Target:  5'- aCCCGGUUGgCGAGGAcCU-GGACGa- -3'
miRNA:   3'- -GGGUCAGCgGCUCCUcGAgCCUGUcc -5'
11091 3' -58.9 NC_002794.1 + 140197 0.7 0.65578
Target:  5'- ---cGUCGUCGAGGGGCgaccCGGGCcGGa -3'
miRNA:   3'- ggguCAGCGGCUCCUCGa---GCCUGuCC- -5'
11091 3' -58.9 NC_002794.1 + 141389 0.68 0.804228
Target:  5'- gUCC-GUCGuUCGGGGGGCUCGGcgacgacgaugaccuCGGGg -3'
miRNA:   3'- -GGGuCAGC-GGCUCCUCGAGCCu--------------GUCC- -5'
11091 3' -58.9 NC_002794.1 + 141442 0.68 0.803385
Target:  5'- gCCGGgggCGCCG-GGAGCggcgcggcgucCGGACuGGc -3'
miRNA:   3'- gGGUCa--GCGGCuCCUCGa----------GCCUGuCC- -5'
11091 3' -58.9 NC_002794.1 + 141594 0.73 0.493921
Target:  5'- gCCCGcGUCGCCGGGcGGCUCGGcgACcGGc -3'
miRNA:   3'- -GGGU-CAGCGGCUCcUCGAGCC--UGuCC- -5'
11091 3' -58.9 NC_002794.1 + 142903 0.67 0.819969
Target:  5'- gCCCGG-CGUCcuccGGGGGC-CGGAgCAGGa -3'
miRNA:   3'- -GGGUCaGCGGc---UCCUCGaGCCU-GUCC- -5'
11091 3' -58.9 NC_002794.1 + 143276 0.73 0.503051
Target:  5'- gCCCGG-CGCCGGccgcucGGGG-UCGGGCGGGu -3'
miRNA:   3'- -GGGUCaGCGGCU------CCUCgAGCCUGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.