miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11091 3' -58.9 NC_002794.1 + 191730 0.68 0.79488
Target:  5'- gCCCAcGgacgCGaccuCCGAGGA-CUCGGACAGa -3'
miRNA:   3'- -GGGU-Ca---GC----GGCUCCUcGAGCCUGUCc -5'
11091 3' -58.9 NC_002794.1 + 185261 0.67 0.828034
Target:  5'- gCCAG-CggacgccgccgGCCGAGuGGGCcgcCGGACAGGu -3'
miRNA:   3'- gGGUCaG-----------CGGCUC-CUCGa--GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 182326 0.67 0.828034
Target:  5'- -gCGGUCgGgCGGGcGGGCgagCGGACGGGc -3'
miRNA:   3'- ggGUCAG-CgGCUC-CUCGa--GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 182268 0.67 0.85422
Target:  5'- gCCgAGUC-CCGAgcggccucccaugacGGGGCgggUGGACGGGc -3'
miRNA:   3'- -GGgUCAGcGGCU---------------CCUCGa--GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 157193 0.66 0.87146
Target:  5'- gUCGGUCGCCGAuGGAGacagguccgcaCGGACAc- -3'
miRNA:   3'- gGGUCAGCGGCU-CCUCga---------GCCUGUcc -5'
11091 3' -58.9 NC_002794.1 + 150607 0.66 0.872155
Target:  5'- gCCGGgCGCCGgcucugcGGGAGCUCGuGAgcCAGu -3'
miRNA:   3'- gGGUCaGCGGC-------UCCUCGAGC-CU--GUCc -5'
11091 3' -58.9 NC_002794.1 + 150424 0.66 0.892709
Target:  5'- gCCCGcGagGCUGGaccuGGAGUcCGGGCGGGu -3'
miRNA:   3'- -GGGU-CagCGGCU----CCUCGaGCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 150030 0.7 0.69239
Target:  5'- aCCCGGcCGCCGAguGGAGCcgcuaccgacugCGGugGGa -3'
miRNA:   3'- -GGGUCaGCGGCU--CCUCGa-----------GCCugUCc -5'
11091 3' -58.9 NC_002794.1 + 149651 0.68 0.759616
Target:  5'- -gCGGuUCGCCGAGGAGgC-CGaGCGGGg -3'
miRNA:   3'- ggGUC-AGCGGCUCCUC-GaGCcUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 149595 0.67 0.819969
Target:  5'- gCCAgGUgGaCCGAGGAGCccCcGACGGGg -3'
miRNA:   3'- gGGU-CAgC-GGCUCCUCGa-GcCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 146882 0.67 0.843678
Target:  5'- gCgCGGUCgGCCGAugauuauaaaaGGcGCUCGGGCGcGGg -3'
miRNA:   3'- -GgGUCAG-CGGCU-----------CCuCGAGCCUGU-CC- -5'
11091 3' -58.9 NC_002794.1 + 145602 0.7 0.684723
Target:  5'- uCCCgcggAGUCGggcgcgaCGAGGAGCUCGGcCcGGa -3'
miRNA:   3'- -GGG----UCAGCg------GCUCCUCGAGCCuGuCC- -5'
11091 3' -58.9 NC_002794.1 + 144297 0.69 0.732076
Target:  5'- aCCCGGUgGaCGAGGAGgaCGGGCcGa -3'
miRNA:   3'- -GGGUCAgCgGCUCCUCgaGCCUGuCc -5'
11091 3' -58.9 NC_002794.1 + 143327 0.67 0.851243
Target:  5'- gUCGGUCGCgugcuCGGGcagcGGGCUCGGGCgauAGGg -3'
miRNA:   3'- gGGUCAGCG-----GCUC----CUCGAGCCUG---UCC- -5'
11091 3' -58.9 NC_002794.1 + 143276 0.73 0.503051
Target:  5'- gCCCGG-CGCCGGccgcucGGGG-UCGGGCGGGu -3'
miRNA:   3'- -GGGUCaGCGGCU------CCUCgAGCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 142903 0.67 0.819969
Target:  5'- gCCCGG-CGUCcuccGGGGGC-CGGAgCAGGa -3'
miRNA:   3'- -GGGUCaGCGGc---UCCUCGaGCCU-GUCC- -5'
11091 3' -58.9 NC_002794.1 + 141594 0.73 0.493921
Target:  5'- gCCCGcGUCGCCGGGcGGCUCGGcgACcGGc -3'
miRNA:   3'- -GGGU-CAGCGGCUCcUCGAGCC--UGuCC- -5'
11091 3' -58.9 NC_002794.1 + 141442 0.68 0.803385
Target:  5'- gCCGGgggCGCCG-GGAGCggcgcggcgucCGGACuGGc -3'
miRNA:   3'- gGGUCa--GCGGCuCCUCGa----------GCCUGuCC- -5'
11091 3' -58.9 NC_002794.1 + 141389 0.68 0.804228
Target:  5'- gUCC-GUCGuUCGGGGGGCUCGGcgacgacgaugaccuCGGGg -3'
miRNA:   3'- -GGGuCAGC-GGCUCCUCGAGCCu--------------GUCC- -5'
11091 3' -58.9 NC_002794.1 + 140197 0.7 0.65578
Target:  5'- ---cGUCGUCGAGGGGCgaccCGGGCcGGa -3'
miRNA:   3'- ggguCAGCGGCUCCUCGa---GCCUGuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.