miRNA display CGI


Results 41 - 60 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11091 3' -58.9 NC_002794.1 + 103574 0.69 0.732076
Target:  5'- gCC-GUgGCCGAcGAGCagcggUCGGGCAGGc -3'
miRNA:   3'- gGGuCAgCGGCUcCUCG-----AGCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 101580 0.69 0.725542
Target:  5'- gCCGGcCGCCGcggccggGGGGGCgggugccggcccgcCGGGCGGGg -3'
miRNA:   3'- gGGUCaGCGGC-------UCCUCGa-------------GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 101271 0.7 0.675104
Target:  5'- cCCCGG-CGCCGGuGGcGGCggCGGGgAGGa -3'
miRNA:   3'- -GGGUCaGCGGCU-CC-UCGa-GCCUgUCC- -5'
11091 3' -58.9 NC_002794.1 + 100524 0.77 0.323876
Target:  5'- aUCCGGUCGgcggcaCCGAGGAGCagCGGGCGGc -3'
miRNA:   3'- -GGGUCAGC------GGCUCCUCGa-GCCUGUCc -5'
11091 3' -58.9 NC_002794.1 + 99251 0.72 0.578345
Target:  5'- aCCCcGcCGCgGAGGGGCUCGG--GGGc -3'
miRNA:   3'- -GGGuCaGCGgCUCCUCGAGCCugUCC- -5'
11091 3' -58.9 NC_002794.1 + 96554 0.71 0.597618
Target:  5'- aCCGGUCGaCGAGGAGCgggagCGG-CuGGu -3'
miRNA:   3'- gGGUCAGCgGCUCCUCGa----GCCuGuCC- -5'
11091 3' -58.9 NC_002794.1 + 95844 0.67 0.828034
Target:  5'- -gCGG-CgGCCGGGGAgGCggCGGGCGGGc -3'
miRNA:   3'- ggGUCaG-CGGCUCCU-CGa-GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 86013 0.66 0.892709
Target:  5'- aCCCGcuggCGCCGAccguGCggCGGACAGGc -3'
miRNA:   3'- -GGGUca--GCGGCUccu-CGa-GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 85740 0.67 0.851243
Target:  5'- aCCCaAGgacCGCCGAcGGcuuccGCUCGGACAc- -3'
miRNA:   3'- -GGG-UCa--GCGGCU-CCu----CGAGCCUGUcc -5'
11091 3' -58.9 NC_002794.1 + 80400 0.67 0.851243
Target:  5'- aCCUAcUCGCCGcggcccAGGuGGCgcCGGGCGGGg -3'
miRNA:   3'- -GGGUcAGCGGC------UCC-UCGa-GCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 73129 0.7 0.665454
Target:  5'- cCCCcGagGCCGAGGAGCUCaugcGACAc- -3'
miRNA:   3'- -GGGuCagCGGCUCCUCGAGc---CUGUcc -5'
11091 3' -58.9 NC_002794.1 + 71098 0.74 0.475894
Target:  5'- gCCGGUCGCCGGcGGccuGGC-CGGAgAGGc -3'
miRNA:   3'- gGGUCAGCGGCU-CC---UCGaGCCUgUCC- -5'
11091 3' -58.9 NC_002794.1 + 70210 0.7 0.694303
Target:  5'- aUCCAGcUCGCCc-GGAcGgUCGGGCGGGc -3'
miRNA:   3'- -GGGUC-AGCGGcuCCU-CgAGCCUGUCC- -5'
11091 3' -58.9 NC_002794.1 + 68846 0.66 0.865122
Target:  5'- uCgCGGUCcCCGAcgaccccGGAGCUCGGGCu-- -3'
miRNA:   3'- -GgGUCAGcGGCU-------CCUCGAGCCUGucc -5'
11091 3' -58.9 NC_002794.1 + 68745 0.69 0.750527
Target:  5'- cCCCGGagGCCGAcuGAGC-CGGGCcgccGGGg -3'
miRNA:   3'- -GGGUCagCGGCUc-CUCGaGCCUG----UCC- -5'
11091 3' -58.9 NC_002794.1 + 53793 0.66 0.879668
Target:  5'- gCCCGGcggguuucUCGgCG-GGAGcCUCGG-CGGGa -3'
miRNA:   3'- -GGGUC--------AGCgGCuCCUC-GAGCCuGUCC- -5'
11091 3' -58.9 NC_002794.1 + 50911 0.69 0.713314
Target:  5'- cUCCAGcUGCC--GGAGCUCGGACucgcccgcGGGa -3'
miRNA:   3'- -GGGUCaGCGGcuCCUCGAGCCUG--------UCC- -5'
11091 3' -58.9 NC_002794.1 + 50601 0.67 0.811751
Target:  5'- gCCGG-CGCCGGGGGGaUCGaGACGa- -3'
miRNA:   3'- gGGUCaGCGGCUCCUCgAGC-CUGUcc -5'
11091 3' -58.9 NC_002794.1 + 44637 0.69 0.713314
Target:  5'- uCCguGUcCGCCGcAGGAuGUUCGGucgACAGGu -3'
miRNA:   3'- -GGguCA-GCGGC-UCCU-CGAGCC---UGUCC- -5'
11091 3' -58.9 NC_002794.1 + 44420 0.67 0.811751
Target:  5'- gCCGG-CGCCGAGcGGCUCGacGACAccGGc -3'
miRNA:   3'- gGGUCaGCGGCUCcUCGAGC--CUGU--CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.