Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11091 | 3' | -58.9 | NC_002794.1 | + | 41672 | 0.67 | 0.851243 |
Target: 5'- aUCgGGcCGCCGcAGGAGCgccCGGACcgccGGa -3' miRNA: 3'- -GGgUCaGCGGC-UCCUCGa--GCCUGu---CC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 146882 | 0.67 | 0.843678 |
Target: 5'- gCgCGGUCgGCCGAugauuauaaaaGGcGCUCGGGCGcGGg -3' miRNA: 3'- -GgGUCAG-CGGCU-----------CCuCGAGCCUGU-CC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 157193 | 0.66 | 0.87146 |
Target: 5'- gUCGGUCGCCGAuGGAGacagguccgcaCGGACAc- -3' miRNA: 3'- gGGUCAGCGGCU-CCUCga---------GCCUGUcc -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 139809 | 0.66 | 0.865834 |
Target: 5'- aCCCGGUUGgCGAGGAcCU-GGACGa- -3' miRNA: 3'- -GGGUCAGCgGCUCCUcGAgCCUGUcc -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 106217 | 0.66 | 0.879668 |
Target: 5'- gUCCAccGUCGCCGcGGccgcGCUCGGgucGCAGa -3' miRNA: 3'- -GGGU--CAGCGGCuCCu---CGAGCC---UGUCc -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 106411 | 0.66 | 0.875599 |
Target: 5'- cCCCGGcggCGCCGGGGcucauGGCgcuguuggagaaggCGGuGCAGGc -3' miRNA: 3'- -GGGUCa--GCGGCUCC-----UCGa-------------GCC-UGUCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 53793 | 0.66 | 0.879668 |
Target: 5'- gCCCGGcggguuucUCGgCG-GGAGcCUCGG-CGGGa -3' miRNA: 3'- -GGGUC--------AGCgGCuCCUC-GAGCCuGUCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 104229 | 0.66 | 0.88629 |
Target: 5'- -aCAGgcuuUCGCaCGAGauggagaucuuGAGCUCGGGCAGc -3' miRNA: 3'- ggGUC----AGCG-GCUC-----------CUCGAGCCUGUCc -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 117866 | 0.66 | 0.88629 |
Target: 5'- gCUGGcgCGCCaGGGAGCUCaGGAUGGu -3' miRNA: 3'- gGGUCa-GCGGcUCCUCGAG-CCUGUCc -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 150424 | 0.66 | 0.892709 |
Target: 5'- gCCCGcGagGCUGGaccuGGAGUcCGGGCGGGu -3' miRNA: 3'- -GGGU-CagCGGCU----CCUCGaGCCUGUCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 150607 | 0.66 | 0.872155 |
Target: 5'- gCCGGgCGCCGgcucugcGGGAGCUCGuGAgcCAGu -3' miRNA: 3'- gGGUCaGCGGC-------UCCUCGAGC-CU--GUCc -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 105825 | 0.66 | 0.858631 |
Target: 5'- aCCgGGUCgGUCGAGcGAGCg-GGACcgAGGg -3' miRNA: 3'- -GGgUCAG-CGGCUC-CUCGagCCUG--UCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 185261 | 0.67 | 0.828034 |
Target: 5'- gCCAG-CggacgccgccgGCCGAGuGGGCcgcCGGACAGGu -3' miRNA: 3'- gGGUCaG-----------CGGCUC-CUCGa--GCCUGUCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 85740 | 0.67 | 0.851243 |
Target: 5'- aCCCaAGgacCGCCGAcGGcuuccGCUCGGACAc- -3' miRNA: 3'- -GGG-UCa--GCGGCU-CCu----CGAGCCUGUcc -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 80400 | 0.67 | 0.851243 |
Target: 5'- aCCUAcUCGCCGcggcccAGGuGGCgcCGGGCGGGg -3' miRNA: 3'- -GGGUcAGCGGC------UCC-UCGa-GCCUGUCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 182268 | 0.67 | 0.85422 |
Target: 5'- gCCgAGUC-CCGAgcggccucccaugacGGGGCgggUGGACGGGc -3' miRNA: 3'- -GGgUCAGcGGCU---------------CCUCGa--GCCUGUCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 143327 | 0.67 | 0.851243 |
Target: 5'- gUCGGUCGCgugcuCGGGcagcGGGCUCGGGCgauAGGg -3' miRNA: 3'- gGGUCAGCG-----GCUC----CUCGAGCCUG---UCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 22624 | 0.66 | 0.858631 |
Target: 5'- aUCgGGcCGCuCGAGGcGCUCGGACc-- -3' miRNA: 3'- -GGgUCaGCG-GCUCCuCGAGCCUGucc -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 124167 | 0.66 | 0.865834 |
Target: 5'- gCCCGGgagagCGUCGGGGAGg--GGACuGGu -3' miRNA: 3'- -GGGUCa----GCGGCUCCUCgagCCUGuCC- -5' |
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11091 | 3' | -58.9 | NC_002794.1 | + | 68846 | 0.66 | 0.865122 |
Target: 5'- uCgCGGUCcCCGAcgaccccGGAGCUCGGGCu-- -3' miRNA: 3'- -GgGUCAGcGGCU-------CCUCGAGCCUGucc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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