miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11091 5' -55.4 NC_002794.1 + 122000 0.66 0.971093
Target:  5'- -cCGGGagcuguuCCACGucGUCuUCUUCGGcGCCg -3'
miRNA:   3'- gaGCCU-------GGUGCucCAG-AGAAGCC-UGG- -5'
11091 5' -55.4 NC_002794.1 + 43674 0.66 0.968526
Target:  5'- uCUCGGGCC-CG-GG-Cg---CGGACCa -3'
miRNA:   3'- -GAGCCUGGuGCuCCaGagaaGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 112293 0.66 0.968526
Target:  5'- gUCGGGCgGCcccccGGGUCcgaCUUCGGcGCCg -3'
miRNA:   3'- gAGCCUGgUGc----UCCAGa--GAAGCC-UGG- -5'
11091 5' -55.4 NC_002794.1 + 80755 0.66 0.968526
Target:  5'- -cCGGGCCACGcgcucGGacCUCUUC-GACCu -3'
miRNA:   3'- gaGCCUGGUGCu----CCa-GAGAAGcCUGG- -5'
11091 5' -55.4 NC_002794.1 + 124928 0.66 0.968526
Target:  5'- cCUCGGugCGCGuGGaccucgacuUCUCcgUGGugCu -3'
miRNA:   3'- -GAGCCugGUGCuCC---------AGAGaaGCCugG- -5'
11091 5' -55.4 NC_002794.1 + 149495 0.66 0.965488
Target:  5'- gCUCGGGgauggggauggUgACGGGGUCgUCgccgggagCGGACCu -3'
miRNA:   3'- -GAGCCU-----------GgUGCUCCAG-AGaa------GCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 146942 0.66 0.965488
Target:  5'- gCUCGGuCUgGCGuGGcucUCUCUUCauGGACCg -3'
miRNA:   3'- -GAGCCuGG-UGCuCC---AGAGAAG--CCUGG- -5'
11091 5' -55.4 NC_002794.1 + 102541 0.66 0.965488
Target:  5'- uCUCGGGCCGCGuGGagaCggCGGcCCu -3'
miRNA:   3'- -GAGCCUGGUGCuCCagaGaaGCCuGG- -5'
11091 5' -55.4 NC_002794.1 + 21726 0.66 0.965488
Target:  5'- gUCGcGAUCGCGAGGcCgaagCGGugCg -3'
miRNA:   3'- gAGC-CUGGUGCUCCaGagaaGCCugG- -5'
11091 5' -55.4 NC_002794.1 + 181774 0.66 0.965488
Target:  5'- -aUGGcGCCGCGccgccGcGUCUCgUUCGGGCCu -3'
miRNA:   3'- gaGCC-UGGUGCu----C-CAGAG-AAGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 90966 0.66 0.965173
Target:  5'- -cCGGGCCcgcuucgGCGuGGcCUCguacCGGGCCg -3'
miRNA:   3'- gaGCCUGG-------UGCuCCaGAGaa--GCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 110290 0.66 0.962249
Target:  5'- cCUCGGGCCcgagagccGCGGGGaCUCUcCGcucGCCg -3'
miRNA:   3'- -GAGCCUGG--------UGCUCCaGAGAaGCc--UGG- -5'
11091 5' -55.4 NC_002794.1 + 144949 0.66 0.962249
Target:  5'- -cUGGACCACcuGuGUCUCcUCGGcGCCu -3'
miRNA:   3'- gaGCCUGGUGcuC-CAGAGaAGCC-UGG- -5'
11091 5' -55.4 NC_002794.1 + 110774 0.66 0.962249
Target:  5'- -cUGGACCACGAGuG-CUCca-GGACg -3'
miRNA:   3'- gaGCCUGGUGCUC-CaGAGaagCCUGg -5'
11091 5' -55.4 NC_002794.1 + 163183 0.66 0.962249
Target:  5'- uUUGGAgCCACGAcaGGUUUUUucUCGGAUg -3'
miRNA:   3'- gAGCCU-GGUGCU--CCAGAGA--AGCCUGg -5'
11091 5' -55.4 NC_002794.1 + 44220 0.66 0.95515
Target:  5'- gCUCGGGCgC-CGAGGgCUCggugcCGGGCg -3'
miRNA:   3'- -GAGCCUG-GuGCUCCaGAGaa---GCCUGg -5'
11091 5' -55.4 NC_002794.1 + 130552 0.66 0.95515
Target:  5'- -gCGGcgucGCCgcgcacguguugGCGAGGUCUCgagcaagUCGGGCa -3'
miRNA:   3'- gaGCC----UGG------------UGCUCCAGAGa------AGCCUGg -5'
11091 5' -55.4 NC_002794.1 + 36981 0.67 0.951282
Target:  5'- --aGGAUCGCGcgcAGGUCggCgaggCGGACCc -3'
miRNA:   3'- gagCCUGGUGC---UCCAGa-Gaa--GCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 77669 0.67 0.951282
Target:  5'- -gCGGGuCUGCGGGGUCaUCgUCGG-CCu -3'
miRNA:   3'- gaGCCU-GGUGCUCCAG-AGaAGCCuGG- -5'
11091 5' -55.4 NC_002794.1 + 110381 0.67 0.947197
Target:  5'- uCUCGG-CCGCuccucguccGAGGaCUCcUCGGAUCc -3'
miRNA:   3'- -GAGCCuGGUG---------CUCCaGAGaAGCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.