Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11091 | 5' | -55.4 | NC_002794.1 | + | 110381 | 0.67 | 0.947197 |
Target: 5'- uCUCGG-CCGCuccucguccGAGGaCUCcUCGGAUCc -3' miRNA: 3'- -GAGCCuGGUG---------CUCCaGAGaAGCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 147519 | 0.67 | 0.947197 |
Target: 5'- cCUCGG-CCugGGgcuGGUCcgCUUCGaACCg -3' miRNA: 3'- -GAGCCuGGugCU---CCAGa-GAAGCcUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 77669 | 0.67 | 0.951282 |
Target: 5'- -gCGGGuCUGCGGGGUCaUCgUCGG-CCu -3' miRNA: 3'- gaGCCU-GGUGCUCCAG-AGaAGCCuGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 36981 | 0.67 | 0.951282 |
Target: 5'- --aGGAUCGCGcgcAGGUCggCgaggCGGACCc -3' miRNA: 3'- gagCCUGGUGC---UCCAGa-Gaa--GCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 86048 | 0.68 | 0.900395 |
Target: 5'- aUCGGGCCGggucuaauCGAccgggacaugcGGaUCUCaUCGGACCg -3' miRNA: 3'- gAGCCUGGU--------GCU-----------CC-AGAGaAGCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 62339 | 0.68 | 0.906489 |
Target: 5'- -gCGGAgcCCGCGccggcgcaccuGGUCUCgUUGGACCg -3' miRNA: 3'- gaGCCU--GGUGCu----------CCAGAGaAGCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 158929 | 0.68 | 0.908275 |
Target: 5'- -cCGGgcauucacguguuuaGCCGCGAGGUacuugcugcaacaUUCUUCGGuCCg -3' miRNA: 3'- gaGCC---------------UGGUGCUCCA-------------GAGAAGCCuGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 89947 | 0.68 | 0.918013 |
Target: 5'- uCUCGGgaGCCGacguCGAGG-Cg-UUCGGACCg -3' miRNA: 3'- -GAGCC--UGGU----GCUCCaGagAAGCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 53853 | 0.68 | 0.912363 |
Target: 5'- uCUCGGcgggguucuCgACGAcGGUCUCggCGGACUc -3' miRNA: 3'- -GAGCCu--------GgUGCU-CCAGAGaaGCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 110171 | 0.68 | 0.923439 |
Target: 5'- -gCGGGgCAUGAGG-CUCgagaUGGGCCg -3' miRNA: 3'- gaGCCUgGUGCUCCaGAGaa--GCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 158459 | 0.68 | 0.92864 |
Target: 5'- uUCGGGCCGgGAGGUUUUgacaGGAg- -3' miRNA: 3'- gAGCCUGGUgCUCCAGAGaag-CCUgg -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 21882 | 0.68 | 0.923439 |
Target: 5'- -cCGG-CCGCGGGGUgUCcgCGG-CCu -3' miRNA: 3'- gaGCCuGGUGCUCCAgAGaaGCCuGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 137349 | 0.69 | 0.866704 |
Target: 5'- gCUCGGcguCguCGGGGUCuUCUUCGaGCCg -3' miRNA: 3'- -GAGCCu--GguGCUCCAG-AGAAGCcUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 101988 | 0.69 | 0.866704 |
Target: 5'- aUCGG-CCGCGAcaugCUCUcgCGGACCu -3' miRNA: 3'- gAGCCuGGUGCUcca-GAGAa-GCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 12890 | 0.69 | 0.880809 |
Target: 5'- -cCGGACCACGAcccgCUCgacUGGGCCg -3' miRNA: 3'- gaGCCUGGUGCUcca-GAGaa-GCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 145611 | 0.69 | 0.880809 |
Target: 5'- gUCGGGCgCgACGAGGagCUCggcccggagaUCGGACCc -3' miRNA: 3'- gAGCCUG-G-UGCUCCa-GAGa---------AGCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 177368 | 0.69 | 0.873858 |
Target: 5'- gCUCGGAUCACgGAGGUaacCUUUaGGCCu -3' miRNA: 3'- -GAGCCUGGUG-CUCCAga-GAAGcCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 45424 | 0.69 | 0.894081 |
Target: 5'- -cCGcaccGCCGCGAGcGUCUCg-CGGACCc -3' miRNA: 3'- gaGCc---UGGUGCUC-CAGAGaaGCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 147155 | 0.69 | 0.887551 |
Target: 5'- --gGGGCCGCGAGGgccagcUGGACCg -3' miRNA: 3'- gagCCUGGUGCUCCagagaaGCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 15233 | 0.7 | 0.851039 |
Target: 5'- -gCGGGCUGCc-GGUCcucuucuuccuccUCUUCGGACCg -3' miRNA: 3'- gaGCCUGGUGcuCCAG-------------AGAAGCCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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