miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11091 5' -55.4 NC_002794.1 + 178826 0.76 0.542991
Target:  5'- aCUCGGGucucCCGCG-GGUCUCgcgugcccCGGACCg -3'
miRNA:   3'- -GAGCCU----GGUGCuCCAGAGaa------GCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 22624 0.74 0.661349
Target:  5'- aUCGGGCCGCucGAGG-Cgc-UCGGACCg -3'
miRNA:   3'- gAGCCUGGUG--CUCCaGagaAGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 147304 0.73 0.7007
Target:  5'- uUCGGA-CACGAGGaguucgugcggCUCUUCgGGGCCg -3'
miRNA:   3'- gAGCCUgGUGCUCCa----------GAGAAG-CCUGG- -5'
11091 5' -55.4 NC_002794.1 + 105779 0.72 0.720083
Target:  5'- -gUGGGCCGCGucgauaggucGGUCUCggagaCGGACCg -3'
miRNA:   3'- gaGCCUGGUGCu---------CCAGAGaa---GCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 85963 0.72 0.748602
Target:  5'- --gGGGCCGCGGcccUCUCaUCGGACCg -3'
miRNA:   3'- gagCCUGGUGCUcc-AGAGaAGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 158271 0.7 0.836154
Target:  5'- gCUCGcACCGCGA-GUCUCUuccaagucugaUCGGACg -3'
miRNA:   3'- -GAGCcUGGUGCUcCAGAGA-----------AGCCUGg -5'
11091 5' -55.4 NC_002794.1 + 93573 0.7 0.84407
Target:  5'- -cCGGggguaGCCGgGAGGUCUuccaCUUCGGGCa -3'
miRNA:   3'- gaGCC-----UGGUgCUCCAGA----GAAGCCUGg -5'
11091 5' -55.4 NC_002794.1 + 15233 0.7 0.851039
Target:  5'- -gCGGGCUGCc-GGUCcucuucuuccuccUCUUCGGACCg -3'
miRNA:   3'- gaGCCUGGUGcuCCAG-------------AGAAGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 114681 0.7 0.859351
Target:  5'- aCUCGGACCGC-AGGgcc---CGGACCu -3'
miRNA:   3'- -GAGCCUGGUGcUCCagagaaGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 41304 0.7 0.859351
Target:  5'- -gCGGGCCGCGugGGGUCUCcgaGGucuCCg -3'
miRNA:   3'- gaGCCUGGUGC--UCCAGAGaagCCu--GG- -5'
11091 5' -55.4 NC_002794.1 + 180896 0.7 0.859351
Target:  5'- uCUCGG-CCGCGGacucggccgcGGUCUCgcCGGcGCCg -3'
miRNA:   3'- -GAGCCuGGUGCU----------CCAGAGaaGCC-UGG- -5'
11091 5' -55.4 NC_002794.1 + 101988 0.69 0.866704
Target:  5'- aUCGG-CCGCGAcaugCUCUcgCGGACCu -3'
miRNA:   3'- gAGCCuGGUGCUcca-GAGAa-GCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 137349 0.69 0.866704
Target:  5'- gCUCGGcguCguCGGGGUCuUCUUCGaGCCg -3'
miRNA:   3'- -GAGCCu--GguGCUCCAG-AGAAGCcUGG- -5'
11091 5' -55.4 NC_002794.1 + 177368 0.69 0.873858
Target:  5'- gCUCGGAUCACgGAGGUaacCUUUaGGCCu -3'
miRNA:   3'- -GAGCCUGGUG-CUCCAga-GAAGcCUGG- -5'
11091 5' -55.4 NC_002794.1 + 145611 0.69 0.880809
Target:  5'- gUCGGGCgCgACGAGGagCUCggcccggagaUCGGACCc -3'
miRNA:   3'- gAGCCUG-G-UGCUCCa-GAGa---------AGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 12890 0.69 0.880809
Target:  5'- -cCGGACCACGAcccgCUCgacUGGGCCg -3'
miRNA:   3'- gaGCCUGGUGCUcca-GAGaa-GCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 147155 0.69 0.887551
Target:  5'- --gGGGCCGCGAGGgccagcUGGACCg -3'
miRNA:   3'- gagCCUGGUGCUCCagagaaGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 45424 0.69 0.894081
Target:  5'- -cCGcaccGCCGCGAGcGUCUCg-CGGACCc -3'
miRNA:   3'- gaGCc---UGGUGCUC-CAGAGaaGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 86048 0.68 0.900395
Target:  5'- aUCGGGCCGggucuaauCGAccgggacaugcGGaUCUCaUCGGACCg -3'
miRNA:   3'- gAGCCUGGU--------GCU-----------CC-AGAGaAGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 62339 0.68 0.906489
Target:  5'- -gCGGAgcCCGCGccggcgcaccuGGUCUCgUUGGACCg -3'
miRNA:   3'- gaGCCU--GGUGCu----------CCAGAGaAGCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.