miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11091 5' -55.4 NC_002794.1 + 158929 0.68 0.908275
Target:  5'- -cCGGgcauucacguguuuaGCCGCGAGGUacuugcugcaacaUUCUUCGGuCCg -3'
miRNA:   3'- gaGCC---------------UGGUGCUCCA-------------GAGAAGCCuGG- -5'
11091 5' -55.4 NC_002794.1 + 53853 0.68 0.912363
Target:  5'- uCUCGGcgggguucuCgACGAcGGUCUCggCGGACUc -3'
miRNA:   3'- -GAGCCu--------GgUGCU-CCAGAGaaGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 89947 0.68 0.918013
Target:  5'- uCUCGGgaGCCGacguCGAGG-Cg-UUCGGACCg -3'
miRNA:   3'- -GAGCC--UGGU----GCUCCaGagAAGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 21882 0.68 0.923439
Target:  5'- -cCGG-CCGCGGGGUgUCcgCGG-CCu -3'
miRNA:   3'- gaGCCuGGUGCUCCAgAGaaGCCuGG- -5'
11091 5' -55.4 NC_002794.1 + 110171 0.68 0.923439
Target:  5'- -gCGGGgCAUGAGG-CUCgagaUGGGCCg -3'
miRNA:   3'- gaGCCUgGUGCUCCaGAGaa--GCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 158459 0.68 0.92864
Target:  5'- uUCGGGCCGgGAGGUUUUgacaGGAg- -3'
miRNA:   3'- gAGCCUGGUgCUCCAGAGaag-CCUgg -5'
11091 5' -55.4 NC_002794.1 + 93735 0.67 0.933615
Target:  5'- gCUCGcGCCGCGAGaccgugCUCUUCGacgccGACCu -3'
miRNA:   3'- -GAGCcUGGUGCUCca----GAGAAGC-----CUGG- -5'
11091 5' -55.4 NC_002794.1 + 143119 0.67 0.938366
Target:  5'- gCUCGG-CCgugGCGcAGGUC---UCGGGCCa -3'
miRNA:   3'- -GAGCCuGG---UGC-UCCAGagaAGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 182198 0.67 0.942893
Target:  5'- cCUCGGcgccggcgucgcGCCACGGGG-CUCcgacggUCaGGCCg -3'
miRNA:   3'- -GAGCC------------UGGUGCUCCaGAGa-----AGcCUGG- -5'
11091 5' -55.4 NC_002794.1 + 110381 0.67 0.947197
Target:  5'- uCUCGG-CCGCuccucguccGAGGaCUCcUCGGAUCc -3'
miRNA:   3'- -GAGCCuGGUG---------CUCCaGAGaAGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 147519 0.67 0.947197
Target:  5'- cCUCGG-CCugGGgcuGGUCcgCUUCGaACCg -3'
miRNA:   3'- -GAGCCuGGugCU---CCAGa-GAAGCcUGG- -5'
11091 5' -55.4 NC_002794.1 + 36981 0.67 0.951282
Target:  5'- --aGGAUCGCGcgcAGGUCggCgaggCGGACCc -3'
miRNA:   3'- gagCCUGGUGC---UCCAGa-Gaa--GCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 77669 0.67 0.951282
Target:  5'- -gCGGGuCUGCGGGGUCaUCgUCGG-CCu -3'
miRNA:   3'- gaGCCU-GGUGCUCCAG-AGaAGCCuGG- -5'
11091 5' -55.4 NC_002794.1 + 44220 0.66 0.95515
Target:  5'- gCUCGGGCgC-CGAGGgCUCggugcCGGGCg -3'
miRNA:   3'- -GAGCCUG-GuGCUCCaGAGaa---GCCUGg -5'
11091 5' -55.4 NC_002794.1 + 130552 0.66 0.95515
Target:  5'- -gCGGcgucGCCgcgcacguguugGCGAGGUCUCgagcaagUCGGGCa -3'
miRNA:   3'- gaGCC----UGG------------UGCUCCAGAGa------AGCCUGg -5'
11091 5' -55.4 NC_002794.1 + 110290 0.66 0.962249
Target:  5'- cCUCGGGCCcgagagccGCGGGGaCUCUcCGcucGCCg -3'
miRNA:   3'- -GAGCCUGG--------UGCUCCaGAGAaGCc--UGG- -5'
11091 5' -55.4 NC_002794.1 + 144949 0.66 0.962249
Target:  5'- -cUGGACCACcuGuGUCUCcUCGGcGCCu -3'
miRNA:   3'- gaGCCUGGUGcuC-CAGAGaAGCC-UGG- -5'
11091 5' -55.4 NC_002794.1 + 110774 0.66 0.962249
Target:  5'- -cUGGACCACGAGuG-CUCca-GGACg -3'
miRNA:   3'- gaGCCUGGUGCUC-CaGAGaagCCUGg -5'
11091 5' -55.4 NC_002794.1 + 163183 0.66 0.962249
Target:  5'- uUUGGAgCCACGAcaGGUUUUUucUCGGAUg -3'
miRNA:   3'- gAGCCU-GGUGCU--CCAGAGA--AGCCUGg -5'
11091 5' -55.4 NC_002794.1 + 90966 0.66 0.965173
Target:  5'- -cCGGGCCcgcuucgGCGuGGcCUCguacCGGGCCg -3'
miRNA:   3'- gaGCCUGG-------UGCuCCaGAGaa--GCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.