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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11091 | 5' | -55.4 | NC_002794.1 | + | 180896 | 0.7 | 0.859351 |
Target: 5'- uCUCGG-CCGCGGacucggccgcGGUCUCgcCGGcGCCg -3' miRNA: 3'- -GAGCCuGGUGCU----------CCAGAGaaGCC-UGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 41304 | 0.7 | 0.859351 |
Target: 5'- -gCGGGCCGCGugGGGUCUCcgaGGucuCCg -3' miRNA: 3'- gaGCCUGGUGC--UCCAGAGaagCCu--GG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 15233 | 0.7 | 0.851039 |
Target: 5'- -gCGGGCUGCc-GGUCcucuucuuccuccUCUUCGGACCg -3' miRNA: 3'- gaGCCUGGUGcuCCAG-------------AGAAGCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 93573 | 0.7 | 0.84407 |
Target: 5'- -cCGGggguaGCCGgGAGGUCUuccaCUUCGGGCa -3' miRNA: 3'- gaGCC-----UGGUgCUCCAGA----GAAGCCUGg -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 158271 | 0.7 | 0.836154 |
Target: 5'- gCUCGcACCGCGA-GUCUCUuccaagucugaUCGGACg -3' miRNA: 3'- -GAGCcUGGUGCUcCAGAGA-----------AGCCUGg -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 85963 | 0.72 | 0.748602 |
Target: 5'- --gGGGCCGCGGcccUCUCaUCGGACCg -3' miRNA: 3'- gagCCUGGUGCUcc-AGAGaAGCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 105779 | 0.72 | 0.720083 |
Target: 5'- -gUGGGCCGCGucgauaggucGGUCUCggagaCGGACCg -3' miRNA: 3'- gaGCCUGGUGCu---------CCAGAGaa---GCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 147304 | 0.73 | 0.7007 |
Target: 5'- uUCGGA-CACGAGGaguucgugcggCUCUUCgGGGCCg -3' miRNA: 3'- gAGCCUgGUGCUCCa----------GAGAAG-CCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 22624 | 0.74 | 0.661349 |
Target: 5'- aUCGGGCCGCucGAGG-Cgc-UCGGACCg -3' miRNA: 3'- gAGCCUGGUG--CUCCaGagaAGCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 178826 | 0.76 | 0.542991 |
Target: 5'- aCUCGGGucucCCGCG-GGUCUCgcgugcccCGGACCg -3' miRNA: 3'- -GAGCCU----GGUGCuCCAGAGaa------GCCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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