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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11091 | 5' | -55.4 | NC_002794.1 | + | 149495 | 0.66 | 0.965488 |
Target: 5'- gCUCGGGgauggggauggUgACGGGGUCgUCgccgggagCGGACCu -3' miRNA: 3'- -GAGCCU-----------GgUGCUCCAG-AGaa------GCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 158271 | 0.7 | 0.836154 |
Target: 5'- gCUCGcACCGCGA-GUCUCUuccaagucugaUCGGACg -3' miRNA: 3'- -GAGCcUGGUGCUcCAGAGA-----------AGCCUGg -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 158459 | 0.68 | 0.92864 |
Target: 5'- uUCGGGCCGgGAGGUUUUgacaGGAg- -3' miRNA: 3'- gAGCCUGGUgCUCCAGAGaag-CCUgg -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 158929 | 0.68 | 0.908275 |
Target: 5'- -cCGGgcauucacguguuuaGCCGCGAGGUacuugcugcaacaUUCUUCGGuCCg -3' miRNA: 3'- gaGCC---------------UGGUGCUCCA-------------GAGAAGCCuGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 163183 | 0.66 | 0.962249 |
Target: 5'- uUUGGAgCCACGAcaGGUUUUUucUCGGAUg -3' miRNA: 3'- gAGCCU-GGUGCU--CCAGAGA--AGCCUGg -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 177368 | 0.69 | 0.873858 |
Target: 5'- gCUCGGAUCACgGAGGUaacCUUUaGGCCu -3' miRNA: 3'- -GAGCCUGGUG-CUCCAga-GAAGcCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 178826 | 0.76 | 0.542991 |
Target: 5'- aCUCGGGucucCCGCG-GGUCUCgcgugcccCGGACCg -3' miRNA: 3'- -GAGCCU----GGUGCuCCAGAGaa------GCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 180896 | 0.7 | 0.859351 |
Target: 5'- uCUCGG-CCGCGGacucggccgcGGUCUCgcCGGcGCCg -3' miRNA: 3'- -GAGCCuGGUGCU----------CCAGAGaaGCC-UGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 181774 | 0.66 | 0.965488 |
Target: 5'- -aUGGcGCCGCGccgccGcGUCUCgUUCGGGCCu -3' miRNA: 3'- gaGCC-UGGUGCu----C-CAGAG-AAGCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 182198 | 0.67 | 0.942893 |
Target: 5'- cCUCGGcgccggcgucgcGCCACGGGG-CUCcgacggUCaGGCCg -3' miRNA: 3'- -GAGCC------------UGGUGCUCCaGAGa-----AGcCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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