miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11091 5' -55.4 NC_002794.1 + 182198 0.67 0.942893
Target:  5'- cCUCGGcgccggcgucgcGCCACGGGG-CUCcgacggUCaGGCCg -3'
miRNA:   3'- -GAGCC------------UGGUGCUCCaGAGa-----AGcCUGG- -5'
11091 5' -55.4 NC_002794.1 + 181774 0.66 0.965488
Target:  5'- -aUGGcGCCGCGccgccGcGUCUCgUUCGGGCCu -3'
miRNA:   3'- gaGCC-UGGUGCu----C-CAGAG-AAGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 180896 0.7 0.859351
Target:  5'- uCUCGG-CCGCGGacucggccgcGGUCUCgcCGGcGCCg -3'
miRNA:   3'- -GAGCCuGGUGCU----------CCAGAGaaGCC-UGG- -5'
11091 5' -55.4 NC_002794.1 + 178826 0.76 0.542991
Target:  5'- aCUCGGGucucCCGCG-GGUCUCgcgugcccCGGACCg -3'
miRNA:   3'- -GAGCCU----GGUGCuCCAGAGaa------GCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 177368 0.69 0.873858
Target:  5'- gCUCGGAUCACgGAGGUaacCUUUaGGCCu -3'
miRNA:   3'- -GAGCCUGGUG-CUCCAga-GAAGcCUGG- -5'
11091 5' -55.4 NC_002794.1 + 163183 0.66 0.962249
Target:  5'- uUUGGAgCCACGAcaGGUUUUUucUCGGAUg -3'
miRNA:   3'- gAGCCU-GGUGCU--CCAGAGA--AGCCUGg -5'
11091 5' -55.4 NC_002794.1 + 158929 0.68 0.908275
Target:  5'- -cCGGgcauucacguguuuaGCCGCGAGGUacuugcugcaacaUUCUUCGGuCCg -3'
miRNA:   3'- gaGCC---------------UGGUGCUCCA-------------GAGAAGCCuGG- -5'
11091 5' -55.4 NC_002794.1 + 158459 0.68 0.92864
Target:  5'- uUCGGGCCGgGAGGUUUUgacaGGAg- -3'
miRNA:   3'- gAGCCUGGUgCUCCAGAGaag-CCUgg -5'
11091 5' -55.4 NC_002794.1 + 158271 0.7 0.836154
Target:  5'- gCUCGcACCGCGA-GUCUCUuccaagucugaUCGGACg -3'
miRNA:   3'- -GAGCcUGGUGCUcCAGAGA-----------AGCCUGg -5'
11091 5' -55.4 NC_002794.1 + 149495 0.66 0.965488
Target:  5'- gCUCGGGgauggggauggUgACGGGGUCgUCgccgggagCGGACCu -3'
miRNA:   3'- -GAGCCU-----------GgUGCUCCAG-AGaa------GCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 147519 0.67 0.947197
Target:  5'- cCUCGG-CCugGGgcuGGUCcgCUUCGaACCg -3'
miRNA:   3'- -GAGCCuGGugCU---CCAGa-GAAGCcUGG- -5'
11091 5' -55.4 NC_002794.1 + 147304 0.73 0.7007
Target:  5'- uUCGGA-CACGAGGaguucgugcggCUCUUCgGGGCCg -3'
miRNA:   3'- gAGCCUgGUGCUCCa----------GAGAAG-CCUGG- -5'
11091 5' -55.4 NC_002794.1 + 147155 0.69 0.887551
Target:  5'- --gGGGCCGCGAGGgccagcUGGACCg -3'
miRNA:   3'- gagCCUGGUGCUCCagagaaGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 146942 0.66 0.965488
Target:  5'- gCUCGGuCUgGCGuGGcucUCUCUUCauGGACCg -3'
miRNA:   3'- -GAGCCuGG-UGCuCC---AGAGAAG--CCUGG- -5'
11091 5' -55.4 NC_002794.1 + 145611 0.69 0.880809
Target:  5'- gUCGGGCgCgACGAGGagCUCggcccggagaUCGGACCc -3'
miRNA:   3'- gAGCCUG-G-UGCUCCa-GAGa---------AGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 144949 0.66 0.962249
Target:  5'- -cUGGACCACcuGuGUCUCcUCGGcGCCu -3'
miRNA:   3'- gaGCCUGGUGcuC-CAGAGaAGCC-UGG- -5'
11091 5' -55.4 NC_002794.1 + 143119 0.67 0.938366
Target:  5'- gCUCGG-CCgugGCGcAGGUC---UCGGGCCa -3'
miRNA:   3'- -GAGCCuGG---UGC-UCCAGagaAGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 137349 0.69 0.866704
Target:  5'- gCUCGGcguCguCGGGGUCuUCUUCGaGCCg -3'
miRNA:   3'- -GAGCCu--GguGCUCCAG-AGAAGCcUGG- -5'
11091 5' -55.4 NC_002794.1 + 130552 0.66 0.95515
Target:  5'- -gCGGcgucGCCgcgcacguguugGCGAGGUCUCgagcaagUCGGGCa -3'
miRNA:   3'- gaGCC----UGG------------UGCUCCAGAGa------AGCCUGg -5'
11091 5' -55.4 NC_002794.1 + 124928 0.66 0.968526
Target:  5'- cCUCGGugCGCGuGGaccucgacuUCUCcgUGGugCu -3'
miRNA:   3'- -GAGCCugGUGCuCC---------AGAGaaGCCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.