miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11091 5' -55.4 NC_002794.1 + 122000 0.66 0.971093
Target:  5'- -cCGGGagcuguuCCACGucGUCuUCUUCGGcGCCg -3'
miRNA:   3'- gaGCCU-------GGUGCucCAG-AGAAGCC-UGG- -5'
11091 5' -55.4 NC_002794.1 + 114681 0.7 0.859351
Target:  5'- aCUCGGACCGC-AGGgcc---CGGACCu -3'
miRNA:   3'- -GAGCCUGGUGcUCCagagaaGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 112293 0.66 0.968526
Target:  5'- gUCGGGCgGCcccccGGGUCcgaCUUCGGcGCCg -3'
miRNA:   3'- gAGCCUGgUGc----UCCAGa--GAAGCC-UGG- -5'
11091 5' -55.4 NC_002794.1 + 110774 0.66 0.962249
Target:  5'- -cUGGACCACGAGuG-CUCca-GGACg -3'
miRNA:   3'- gaGCCUGGUGCUC-CaGAGaagCCUGg -5'
11091 5' -55.4 NC_002794.1 + 110381 0.67 0.947197
Target:  5'- uCUCGG-CCGCuccucguccGAGGaCUCcUCGGAUCc -3'
miRNA:   3'- -GAGCCuGGUG---------CUCCaGAGaAGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 110290 0.66 0.962249
Target:  5'- cCUCGGGCCcgagagccGCGGGGaCUCUcCGcucGCCg -3'
miRNA:   3'- -GAGCCUGG--------UGCUCCaGAGAaGCc--UGG- -5'
11091 5' -55.4 NC_002794.1 + 110171 0.68 0.923439
Target:  5'- -gCGGGgCAUGAGG-CUCgagaUGGGCCg -3'
miRNA:   3'- gaGCCUgGUGCUCCaGAGaa--GCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 105779 0.72 0.720083
Target:  5'- -gUGGGCCGCGucgauaggucGGUCUCggagaCGGACCg -3'
miRNA:   3'- gaGCCUGGUGCu---------CCAGAGaa---GCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 102541 0.66 0.965488
Target:  5'- uCUCGGGCCGCGuGGagaCggCGGcCCu -3'
miRNA:   3'- -GAGCCUGGUGCuCCagaGaaGCCuGG- -5'
11091 5' -55.4 NC_002794.1 + 101988 0.69 0.866704
Target:  5'- aUCGG-CCGCGAcaugCUCUcgCGGACCu -3'
miRNA:   3'- gAGCCuGGUGCUcca-GAGAa-GCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 93735 0.67 0.933615
Target:  5'- gCUCGcGCCGCGAGaccgugCUCUUCGacgccGACCu -3'
miRNA:   3'- -GAGCcUGGUGCUCca----GAGAAGC-----CUGG- -5'
11091 5' -55.4 NC_002794.1 + 93573 0.7 0.84407
Target:  5'- -cCGGggguaGCCGgGAGGUCUuccaCUUCGGGCa -3'
miRNA:   3'- gaGCC-----UGGUgCUCCAGA----GAAGCCUGg -5'
11091 5' -55.4 NC_002794.1 + 90966 0.66 0.965173
Target:  5'- -cCGGGCCcgcuucgGCGuGGcCUCguacCGGGCCg -3'
miRNA:   3'- gaGCCUGG-------UGCuCCaGAGaa--GCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 89947 0.68 0.918013
Target:  5'- uCUCGGgaGCCGacguCGAGG-Cg-UUCGGACCg -3'
miRNA:   3'- -GAGCC--UGGU----GCUCCaGagAAGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 86048 0.68 0.900395
Target:  5'- aUCGGGCCGggucuaauCGAccgggacaugcGGaUCUCaUCGGACCg -3'
miRNA:   3'- gAGCCUGGU--------GCU-----------CC-AGAGaAGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 85963 0.72 0.748602
Target:  5'- --gGGGCCGCGGcccUCUCaUCGGACCg -3'
miRNA:   3'- gagCCUGGUGCUcc-AGAGaAGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 80755 0.66 0.968526
Target:  5'- -cCGGGCCACGcgcucGGacCUCUUC-GACCu -3'
miRNA:   3'- gaGCCUGGUGCu----CCa-GAGAAGcCUGG- -5'
11091 5' -55.4 NC_002794.1 + 77669 0.67 0.951282
Target:  5'- -gCGGGuCUGCGGGGUCaUCgUCGG-CCu -3'
miRNA:   3'- gaGCCU-GGUGCUCCAG-AGaAGCCuGG- -5'
11091 5' -55.4 NC_002794.1 + 62339 0.68 0.906489
Target:  5'- -gCGGAgcCCGCGccggcgcaccuGGUCUCgUUGGACCg -3'
miRNA:   3'- gaGCCU--GGUGCu----------CCAGAGaAGCCUGG- -5'
11091 5' -55.4 NC_002794.1 + 53853 0.68 0.912363
Target:  5'- uCUCGGcgggguucuCgACGAcGGUCUCggCGGACUc -3'
miRNA:   3'- -GAGCCu--------GgUGCU-CCAGAGaaGCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.