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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11091 | 5' | -55.4 | NC_002794.1 | + | 143119 | 0.67 | 0.938366 |
Target: 5'- gCUCGG-CCgugGCGcAGGUC---UCGGGCCa -3' miRNA: 3'- -GAGCCuGG---UGC-UCCAGagaAGCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 182198 | 0.67 | 0.942893 |
Target: 5'- cCUCGGcgccggcgucgcGCCACGGGG-CUCcgacggUCaGGCCg -3' miRNA: 3'- -GAGCC------------UGGUGCUCCaGAGa-----AGcCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 110381 | 0.67 | 0.947197 |
Target: 5'- uCUCGG-CCGCuccucguccGAGGaCUCcUCGGAUCc -3' miRNA: 3'- -GAGCCuGGUG---------CUCCaGAGaAGCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 147519 | 0.67 | 0.947197 |
Target: 5'- cCUCGG-CCugGGgcuGGUCcgCUUCGaACCg -3' miRNA: 3'- -GAGCCuGGugCU---CCAGa-GAAGCcUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 77669 | 0.67 | 0.951282 |
Target: 5'- -gCGGGuCUGCGGGGUCaUCgUCGG-CCu -3' miRNA: 3'- gaGCCU-GGUGCUCCAG-AGaAGCCuGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 36981 | 0.67 | 0.951282 |
Target: 5'- --aGGAUCGCGcgcAGGUCggCgaggCGGACCc -3' miRNA: 3'- gagCCUGGUGC---UCCAGa-Gaa--GCCUGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 130552 | 0.66 | 0.95515 |
Target: 5'- -gCGGcgucGCCgcgcacguguugGCGAGGUCUCgagcaagUCGGGCa -3' miRNA: 3'- gaGCC----UGG------------UGCUCCAGAGa------AGCCUGg -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 44220 | 0.66 | 0.95515 |
Target: 5'- gCUCGGGCgC-CGAGGgCUCggugcCGGGCg -3' miRNA: 3'- -GAGCCUG-GuGCUCCaGAGaa---GCCUGg -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 110290 | 0.66 | 0.962249 |
Target: 5'- cCUCGGGCCcgagagccGCGGGGaCUCUcCGcucGCCg -3' miRNA: 3'- -GAGCCUGG--------UGCUCCaGAGAaGCc--UGG- -5' |
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11091 | 5' | -55.4 | NC_002794.1 | + | 122000 | 0.66 | 0.971093 |
Target: 5'- -cCGGGagcuguuCCACGucGUCuUCUUCGGcGCCg -3' miRNA: 3'- gaGCCU-------GGUGCucCAG-AGAAGCC-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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