miRNA display CGI


Results 1 - 20 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 3' -58.6 NC_002794.1 + 140106 0.66 0.895662
Target:  5'- cGGCGG-CGAUCGaCGgcGgucgaCGGUggGCGGg -3'
miRNA:   3'- -UCGCCgGCUAGC-GCuuCa----GCCA--CGCC- -5'
11092 3' -58.6 NC_002794.1 + 68313 0.66 0.895662
Target:  5'- uGGCGGCCGA-CGCGuuccgcGGcCuGGUGacCGGg -3'
miRNA:   3'- -UCGCCGGCUaGCGCu-----UCaG-CCAC--GCC- -5'
11092 3' -58.6 NC_002794.1 + 41261 0.66 0.895662
Target:  5'- cGGCGGCCcgucGUCGCGcuccGAGaaCGGcgGCGGc -3'
miRNA:   3'- -UCGCCGGc---UAGCGC----UUCa-GCCa-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 12193 0.66 0.891869
Target:  5'- cGCGGCCGGgcgCcgcucggacgugccgGCGgcGUCGGcggcgccgGCGGc -3'
miRNA:   3'- uCGCCGGCUa--G---------------CGCuuCAGCCa-------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 104887 0.66 0.882729
Target:  5'- aAGCgGGCCGGcCGCGAGG-CGccGUGCu- -3'
miRNA:   3'- -UCG-CCGGCUaGCGCUUCaGC--CACGcc -5'
11092 3' -58.6 NC_002794.1 + 119504 0.66 0.882729
Target:  5'- cGgGGUCGucggcggCGCGGAGcCGGccGCGGa -3'
miRNA:   3'- uCgCCGGCua-----GCGCUUCaGCCa-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 11551 0.66 0.882729
Target:  5'- cGCGGCUGGUCGCuaGAAuGUCaGGgGCa- -3'
miRNA:   3'- uCGCCGGCUAGCG--CUU-CAG-CCaCGcc -5'
11092 3' -58.6 NC_002794.1 + 127343 0.66 0.882729
Target:  5'- cGCuGCCGAgacgcUCGCGgcGgCGGcGCGGc -3'
miRNA:   3'- uCGcCGGCU-----AGCGCuuCaGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 145250 0.66 0.882061
Target:  5'- uGCGgaaGCgGAUCGCGAAG-CGGUuauugccGUGGc -3'
miRNA:   3'- uCGC---CGgCUAGCGCUUCaGCCA-------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 49588 0.66 0.875957
Target:  5'- -cCGGaucCCGAUCGCGA--UCGGcgacgGCGGg -3'
miRNA:   3'- ucGCC---GGCUAGCGCUucAGCCa----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 44217 0.66 0.875957
Target:  5'- -cCGGCuCGggCGcCGAGGgcUCGGUGcCGGg -3'
miRNA:   3'- ucGCCG-GCuaGC-GCUUC--AGCCAC-GCC- -5'
11092 3' -58.6 NC_002794.1 + 107004 0.66 0.875957
Target:  5'- cGCuGGCCGA-CGCGA---CGGUGCu- -3'
miRNA:   3'- uCG-CCGGCUaGCGCUucaGCCACGcc -5'
11092 3' -58.6 NC_002794.1 + 112335 0.66 0.868987
Target:  5'- gAGCGcGCCGGcCgGCGgcGcCGGcgGCGGg -3'
miRNA:   3'- -UCGC-CGGCUaG-CGCuuCaGCCa-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 57416 0.66 0.868987
Target:  5'- cGUGGCCGG-CGUGcuGGUCGGcacgGCGc -3'
miRNA:   3'- uCGCCGGCUaGCGCu-UCAGCCa---CGCc -5'
11092 3' -58.6 NC_002794.1 + 116061 0.66 0.868987
Target:  5'- gAGCGcGaCUGGggUCGCGGAGcgcUCGGcGCGGc -3'
miRNA:   3'- -UCGC-C-GGCU--AGCGCUUC---AGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 146968 0.66 0.868987
Target:  5'- -aUGGaCCGccuGUCGCGAGGUCGGcGCc- -3'
miRNA:   3'- ucGCC-GGC---UAGCGCUUCAGCCaCGcc -5'
11092 3' -58.6 NC_002794.1 + 129816 0.66 0.868987
Target:  5'- cGCGucuGCCGcaucAUCGCgGAAGUCGaG-GCGGa -3'
miRNA:   3'- uCGC---CGGC----UAGCG-CUUCAGC-CaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 156457 0.66 0.861823
Target:  5'- aGGCGGuuGGUUaggggGCGggGgacgaCGGgGCGGc -3'
miRNA:   3'- -UCGCCggCUAG-----CGCuuCa----GCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 20375 0.66 0.861823
Target:  5'- uGC-GCCgGAUCGuCGAcG-CGGUGCGGc -3'
miRNA:   3'- uCGcCGG-CUAGC-GCUuCaGCCACGCC- -5'
11092 3' -58.6 NC_002794.1 + 59195 0.66 0.861823
Target:  5'- uGGCGGUCGA-CGCGcacGUCGGcgucucggccGCGGc -3'
miRNA:   3'- -UCGCCGGCUaGCGCuu-CAGCCa---------CGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.