miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 3' -58.6 NC_002794.1 + 26653 0.67 0.85447
Target:  5'- cGGCGGCCGGcucgUCgGCGggGU-GGaGCGc -3'
miRNA:   3'- -UCGCCGGCU----AG-CGCuuCAgCCaCGCc -5'
11092 3' -58.6 NC_002794.1 + 55393 0.67 0.85447
Target:  5'- aGGCGGCCGAggCGgcCGAGG-CGGccgagGCGa -3'
miRNA:   3'- -UCGCCGGCUa-GC--GCUUCaGCCa----CGCc -5'
11092 3' -58.6 NC_002794.1 + 116358 0.67 0.839222
Target:  5'- -aCGGCCGcgCGgucCGAccGGUCGGUggcguGCGGg -3'
miRNA:   3'- ucGCCGGCuaGC---GCU--UCAGCCA-----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 52867 0.67 0.846171
Target:  5'- cGCGGCCuuccgguacacccGAUgGUGggGUCGaacGCGGc -3'
miRNA:   3'- uCGCCGG-------------CUAgCGCuuCAGCca-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 126250 0.67 0.846935
Target:  5'- cGUGGCg---CGCGAGGUCGGcggcuggcugGCGGc -3'
miRNA:   3'- uCGCCGgcuaGCGCUUCAGCCa---------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 102358 0.67 0.839222
Target:  5'- cGGCGuGCCGcuUCGUGAAGaCGGUGg-- -3'
miRNA:   3'- -UCGC-CGGCu-AGCGCUUCaGCCACgcc -5'
11092 3' -58.6 NC_002794.1 + 113504 0.67 0.839222
Target:  5'- cGCGGCCGAgagcCGCGGAGggagcuccgcCGGcucgGCGu -3'
miRNA:   3'- uCGCCGGCUa---GCGCUUCa---------GCCa---CGCc -5'
11092 3' -58.6 NC_002794.1 + 67025 0.67 0.839222
Target:  5'- cGGCGGCCGGcucccgccgcgUCGCGGAccCGGcguccGUGGg -3'
miRNA:   3'- -UCGCCGGCU-----------AGCGCUUcaGCCa----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 101031 0.68 0.79736
Target:  5'- cGCgGGCCGggCGCG-GGUCGGccgcuacUGCGu -3'
miRNA:   3'- uCG-CCGGCuaGCGCuUCAGCC-------ACGCc -5'
11092 3' -58.6 NC_002794.1 + 190764 0.68 0.798218
Target:  5'- cGGCGGCCGcgCGUcccgguagauGAAcUCGGUcCGGg -3'
miRNA:   3'- -UCGCCGGCuaGCG----------CUUcAGCCAcGCC- -5'
11092 3' -58.6 NC_002794.1 + 94481 0.68 0.789578
Target:  5'- cGGCGGCgGA-CGCGGccgCGGgccgugGCGGg -3'
miRNA:   3'- -UCGCCGgCUaGCGCUucaGCCa-----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 12155 0.68 0.789578
Target:  5'- gAGCGGCCGAUCGCccGGAucGUCGccGCc- -3'
miRNA:   3'- -UCGCCGGCUAGCG--CUU--CAGCcaCGcc -5'
11092 3' -58.6 NC_002794.1 + 66018 0.68 0.789578
Target:  5'- aGGCGGCCGcggucGUCGCcgucGucGUCGGgccggcaGCGGc -3'
miRNA:   3'- -UCGCCGGC-----UAGCG----CuuCAGCCa------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 108334 0.68 0.798218
Target:  5'- cGGCGGCgcaggaggaGGUgGCGGAG-CGGggaGCGGa -3'
miRNA:   3'- -UCGCCGg--------CUAgCGCUUCaGCCa--CGCC- -5'
11092 3' -58.6 NC_002794.1 + 139447 0.68 0.798218
Target:  5'- cGCGcGCCGAUCG-GcAGGUCGucGUGCGc -3'
miRNA:   3'- uCGC-CGGCUAGCgC-UUCAGC--CACGCc -5'
11092 3' -58.6 NC_002794.1 + 156399 0.68 0.798218
Target:  5'- gAGCGGCCGGcgcCGCGGccgcGGccaCGGccgGCGGg -3'
miRNA:   3'- -UCGCCGGCUa--GCGCU----UCa--GCCa--CGCC- -5'
11092 3' -58.6 NC_002794.1 + 147051 0.68 0.798218
Target:  5'- cGGCGGCCGGUCuaaggaCGGAGccgCGG-GCGc -3'
miRNA:   3'- -UCGCCGGCUAGc-----GCUUCa--GCCaCGCc -5'
11092 3' -58.6 NC_002794.1 + 92269 0.68 0.806721
Target:  5'- cGGCGGCgccgggCGAggCGCGcaAGGUCGGcgacgagGCGGg -3'
miRNA:   3'- -UCGCCG------GCUa-GCGC--UUCAGCCa------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 40400 0.68 0.798218
Target:  5'- ---cGCCGAuucggUCGCGggGUCGGccgGCGa -3'
miRNA:   3'- ucgcCGGCU-----AGCGCuuCAGCCa--CGCc -5'
11092 3' -58.6 NC_002794.1 + 122975 0.68 0.789578
Target:  5'- gGGUGGCUGuacgCGCGcc--UGGUGCGGg -3'
miRNA:   3'- -UCGCCGGCua--GCGCuucaGCCACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.