miRNA display CGI


Results 61 - 80 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 3' -58.6 NC_002794.1 + 92269 0.68 0.806721
Target:  5'- cGGCGGCgccgggCGAggCGCGcaAGGUCGGcgacgagGCGGg -3'
miRNA:   3'- -UCGCCG------GCUa-GCGC--UUCAGCCa------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 147051 0.68 0.798218
Target:  5'- cGGCGGCCGGUCuaaggaCGGAGccgCGG-GCGc -3'
miRNA:   3'- -UCGCCGGCUAGc-----GCUUCa--GCCaCGCc -5'
11092 3' -58.6 NC_002794.1 + 156399 0.68 0.798218
Target:  5'- gAGCGGCCGGcgcCGCGGccgcGGccaCGGccgGCGGg -3'
miRNA:   3'- -UCGCCGGCUa--GCGCU----UCa--GCCa--CGCC- -5'
11092 3' -58.6 NC_002794.1 + 139447 0.68 0.798218
Target:  5'- cGCGcGCCGAUCG-GcAGGUCGucGUGCGc -3'
miRNA:   3'- uCGC-CGGCUAGCgC-UUCAGC--CACGCc -5'
11092 3' -58.6 NC_002794.1 + 108334 0.68 0.798218
Target:  5'- cGGCGGCgcaggaggaGGUgGCGGAG-CGGggaGCGGa -3'
miRNA:   3'- -UCGCCGg--------CUAgCGCUUCaGCCa--CGCC- -5'
11092 3' -58.6 NC_002794.1 + 101031 0.68 0.79736
Target:  5'- cGCgGGCCGggCGCG-GGUCGGccgcuacUGCGu -3'
miRNA:   3'- uCG-CCGGCuaGCGCuUCAGCC-------ACGCc -5'
11092 3' -58.6 NC_002794.1 + 49021 0.69 0.725925
Target:  5'- cGGCGGCCGcg-GCGucGUCcGGcGCGGu -3'
miRNA:   3'- -UCGCCGGCuagCGCuuCAG-CCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 54241 0.69 0.725925
Target:  5'- aAGCGGCCGAgCGCGcGGUCcacgGCGc -3'
miRNA:   3'- -UCGCCGGCUaGCGCuUCAGcca-CGCc -5'
11092 3' -58.6 NC_002794.1 + 176606 0.69 0.720263
Target:  5'- gAGCGGCCGGcacggccauccUCGUGgcGuUCGGcccggaacguuggauUGCGGa -3'
miRNA:   3'- -UCGCCGGCU-----------AGCGCuuC-AGCC---------------ACGCC- -5'
11092 3' -58.6 NC_002794.1 + 129209 0.69 0.710771
Target:  5'- gAGCGGCCGAcggcgguggauaggCGCGAA--CGG-GCGGc -3'
miRNA:   3'- -UCGCCGGCUa-------------GCGCUUcaGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 95824 0.69 0.715525
Target:  5'- cGGCGGCCGGgggaGCGGcggcggcGGcCGGggagGCGGc -3'
miRNA:   3'- -UCGCCGGCUag--CGCU-------UCaGCCa---CGCC- -5'
11092 3' -58.6 NC_002794.1 + 104797 0.69 0.706956
Target:  5'- aGGCGGUgcugcuucgCGAUgGCcAGGUCGGUcaGCGGa -3'
miRNA:   3'- -UCGCCG---------GCUAgCGcUUCAGCCA--CGCC- -5'
11092 3' -58.6 NC_002794.1 + 13071 0.69 0.725925
Target:  5'- aGGgGGCCGcgcgaccggCGCGAAGUCccgggggacgaGGUGCGu -3'
miRNA:   3'- -UCgCCGGCua-------GCGCUUCAG-----------CCACGCc -5'
11092 3' -58.6 NC_002794.1 + 78988 0.69 0.725925
Target:  5'- uGCGGCCGcUCcCGGAGUCGcG-GCGa -3'
miRNA:   3'- uCGCCGGCuAGcGCUUCAGC-CaCGCc -5'
11092 3' -58.6 NC_002794.1 + 49426 0.69 0.735303
Target:  5'- cGGCGGCCG-UCaCGgcGUCcGGcGCGGu -3'
miRNA:   3'- -UCGCCGGCuAGcGCuuCAG-CCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 43182 0.69 0.735303
Target:  5'- uAGCGGuuGcgCGCGccgaccgggaAGGUgGcGUGCGGa -3'
miRNA:   3'- -UCGCCggCuaGCGC----------UUCAgC-CACGCC- -5'
11092 3' -58.6 NC_002794.1 + 148101 0.69 0.753807
Target:  5'- cAGCuGCCGcUCaagaaGCGAcGGUCGGUGuCGGg -3'
miRNA:   3'- -UCGcCGGCuAG-----CGCU-UCAGCCAC-GCC- -5'
11092 3' -58.6 NC_002794.1 + 89717 0.69 0.753807
Target:  5'- cGCGguGCCGAUccgCGCGgcGUCGGUccuuggggauucGCGGc -3'
miRNA:   3'- uCGC--CGGCUA---GCGCuuCAGCCA------------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 6133 0.69 0.7446
Target:  5'- uGCGGUCGAUCGgGggG-CGGaGCc- -3'
miRNA:   3'- uCGCCGGCUAGCgCuuCaGCCaCGcc -5'
11092 3' -58.6 NC_002794.1 + 98356 0.69 0.753807
Target:  5'- -cCGGCCGAUCGCcgcg-CGGcugGCGGg -3'
miRNA:   3'- ucGCCGGCUAGCGcuucaGCCa--CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.