miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 3' -58.6 NC_002794.1 + 145591 0.82 0.170092
Target:  5'- cGGCGGCCGGcuccCGCGGAGUCGG-GCGc -3'
miRNA:   3'- -UCGCCGGCUa---GCGCUUCAGCCaCGCc -5'
11092 3' -58.6 NC_002794.1 + 101495 0.81 0.182819
Target:  5'- cGGCGGCCGGUC-CGAg--CGGUGCGGc -3'
miRNA:   3'- -UCGCCGGCUAGcGCUucaGCCACGCC- -5'
11092 3' -58.6 NC_002794.1 + 108604 0.79 0.231465
Target:  5'- cGCGGCCGAccuggUCGCGGugguguGUCGGaacUGCGGg -3'
miRNA:   3'- uCGCCGGCU-----AGCGCUu-----CAGCC---ACGCC- -5'
11092 3' -58.6 NC_002794.1 + 185178 0.78 0.265614
Target:  5'- cGCGGCgCGGUCgGCGcGGUCGGcGCGGu -3'
miRNA:   3'- uCGCCG-GCUAG-CGCuUCAGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 100763 0.78 0.271687
Target:  5'- cGCuGGCCGGUCGCGGAGUacacgcgccugCGGUucGCGGc -3'
miRNA:   3'- uCG-CCGGCUAGCGCUUCA-----------GCCA--CGCC- -5'
11092 3' -58.6 NC_002794.1 + 138758 0.78 0.284167
Target:  5'- cGGgGGCCGAgUCGCGGcGGUCGGUGgaGGg -3'
miRNA:   3'- -UCgCCGGCU-AGCGCU-UCAGCCACg-CC- -5'
11092 3' -58.6 NC_002794.1 + 180954 0.76 0.345915
Target:  5'- cGCGGCCGA-CGCGGAcuccGUCGGgGCGa -3'
miRNA:   3'- uCGCCGGCUaGCGCUU----CAGCCaCGCc -5'
11092 3' -58.6 NC_002794.1 + 116908 0.75 0.408414
Target:  5'- cGGCGGCCGGUC-CGgcGUCGGcuccgGCGu -3'
miRNA:   3'- -UCGCCGGCUAGcGCuuCAGCCa----CGCc -5'
11092 3' -58.6 NC_002794.1 + 156504 0.74 0.45967
Target:  5'- uAGCGGCCcguuGAUCGCGAGuccgCGGUGaGGg -3'
miRNA:   3'- -UCGCCGG----CUAGCGCUUca--GCCACgCC- -5'
11092 3' -58.6 NC_002794.1 + 126399 0.74 0.45967
Target:  5'- cGGCGGCgugcgcggCGGUCGCGAucuggcugcuGGUCgaGGUGUGGg -3'
miRNA:   3'- -UCGCCG--------GCUAGCGCU----------UCAG--CCACGCC- -5'
11092 3' -58.6 NC_002794.1 + 146824 0.74 0.466762
Target:  5'- cGCGGUCGcugucguuuggCGCGAgAGUCGGUGCGc -3'
miRNA:   3'- uCGCCGGCua---------GCGCU-UCAGCCACGCc -5'
11092 3' -58.6 NC_002794.1 + 161051 0.74 0.467652
Target:  5'- uGCGGCCGAuUCGaCGAauacgaaAGUCGGUcCGGu -3'
miRNA:   3'- uCGCCGGCU-AGC-GCU-------UCAGCCAcGCC- -5'
11092 3' -58.6 NC_002794.1 + 142942 0.74 0.477504
Target:  5'- aGGUGGCCGAg-GgGAAGUCGGcgGCGu -3'
miRNA:   3'- -UCGCCGGCUagCgCUUCAGCCa-CGCc -5'
11092 3' -58.6 NC_002794.1 + 149465 0.73 0.495672
Target:  5'- gGGCGGUCGAggaGCGAGGggGG-GCGGc -3'
miRNA:   3'- -UCGCCGGCUag-CGCUUCagCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 142130 0.73 0.504873
Target:  5'- cGGCGGCCGAcCGCcGGGUCacgGCGGa -3'
miRNA:   3'- -UCGCCGGCUaGCGcUUCAGccaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 74076 0.73 0.532897
Target:  5'- uGGCGGCCcuccUCGCcGAGUCGGgacagcUGCGGc -3'
miRNA:   3'- -UCGCCGGcu--AGCGcUUCAGCC------ACGCC- -5'
11092 3' -58.6 NC_002794.1 + 47755 0.72 0.542364
Target:  5'- uGGCGGCCGugGUCGCGGcacaacgcgcaGGUCGa-GCGGc -3'
miRNA:   3'- -UCGCCGGC--UAGCGCU-----------UCAGCcaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 94035 0.72 0.542364
Target:  5'- cGGCGGgcCCGAgaGCGgcGgCGGUGCGGg -3'
miRNA:   3'- -UCGCC--GGCUagCGCuuCaGCCACGCC- -5'
11092 3' -58.6 NC_002794.1 + 154349 0.72 0.59042
Target:  5'- cGCGGCCGAgcucccgCGCGGuccAGgccgCGGcgGCGGc -3'
miRNA:   3'- uCGCCGGCUa------GCGCU---UCa---GCCa-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 126163 0.72 0.59042
Target:  5'- cGCGGUCuacgCGCaGAGGUCGGUGCu- -3'
miRNA:   3'- uCGCCGGcua-GCG-CUUCAGCCACGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.