miRNA display CGI


Results 21 - 40 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 3' -58.6 NC_002794.1 + 110430 0.72 0.59042
Target:  5'- gGGCGGCUG-UCGUc--GUCGGUGgCGGa -3'
miRNA:   3'- -UCGCCGGCuAGCGcuuCAGCCAC-GCC- -5'
11092 3' -58.6 NC_002794.1 + 63170 0.71 0.600137
Target:  5'- -aCGGCCGAggcCGCGAAG-CGGUcGCGc -3'
miRNA:   3'- ucGCCGGCUa--GCGCUUCaGCCA-CGCc -5'
11092 3' -58.6 NC_002794.1 + 35986 0.71 0.609875
Target:  5'- cGCGGacCCGGuuuuauugUCGCGggGcUCGGgcgGCGGa -3'
miRNA:   3'- uCGCC--GGCU--------AGCGCuuC-AGCCa--CGCC- -5'
11092 3' -58.6 NC_002794.1 + 55301 0.71 0.609875
Target:  5'- cGGCGGCgGcGUCGCGgcGggcgCGG-GCGGc -3'
miRNA:   3'- -UCGCCGgC-UAGCGCuuCa---GCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 34084 0.71 0.619629
Target:  5'- cGGCGGCCGGgcaGCc--GUCGG-GCGGc -3'
miRNA:   3'- -UCGCCGGCUag-CGcuuCAGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 142349 0.71 0.619629
Target:  5'- aGGCGGCgGAggcgGCGGAGgcggCGGagGCGGa -3'
miRNA:   3'- -UCGCCGgCUag--CGCUUCa---GCCa-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 603 0.71 0.639155
Target:  5'- cGUGGCCGggUGCGGucAGgcggccCGGUGUGGc -3'
miRNA:   3'- uCGCCGGCuaGCGCU--UCa-----GCCACGCC- -5'
11092 3' -58.6 NC_002794.1 + 140666 0.71 0.639155
Target:  5'- cAGCuuuugGGUCGggCGC-AGGUCGGUGCGa -3'
miRNA:   3'- -UCG-----CCGGCuaGCGcUUCAGCCACGCc -5'
11092 3' -58.6 NC_002794.1 + 61533 0.7 0.646963
Target:  5'- cGGCGGCCGc-CGCGAAGacgacgccgccgCGGcgGCGGc -3'
miRNA:   3'- -UCGCCGGCuaGCGCUUCa-----------GCCa-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 32859 0.7 0.648915
Target:  5'- cAGCGGCCGAgccgGCGGgcGG-CGGcgGCGGc -3'
miRNA:   3'- -UCGCCGGCUag--CGCU--UCaGCCa-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 179117 0.7 0.648915
Target:  5'- cGCGGuCCGggCGCGcGGUCGGU-CGa -3'
miRNA:   3'- uCGCC-GGCuaGCGCuUCAGCCAcGCc -5'
11092 3' -58.6 NC_002794.1 + 55357 0.7 0.648915
Target:  5'- aGGCGGCCGAggCGgcCGAGG-CGGccgagGCGGc -3'
miRNA:   3'- -UCGCCGGCUa-GC--GCUUCaGCCa----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 143279 0.7 0.648915
Target:  5'- cGGC-GCCGGcCGCucGggGUCGG-GCGGg -3'
miRNA:   3'- -UCGcCGGCUaGCG--CuuCAGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 21723 0.7 0.658661
Target:  5'- uGCGuCgCGAUCGCGAGGccgaagCGGUGCGc -3'
miRNA:   3'- uCGCcG-GCUAGCGCUUCa-----GCCACGCc -5'
11092 3' -58.6 NC_002794.1 + 186301 0.7 0.658661
Target:  5'- aGGCGGCCGGUCGCcg---CGGcGCGc -3'
miRNA:   3'- -UCGCCGGCUAGCGcuucaGCCaCGCc -5'
11092 3' -58.6 NC_002794.1 + 105806 0.7 0.667418
Target:  5'- gAGaCGGaCCGAaagCGCGAccgGGUCGGUcgagcgaGCGGg -3'
miRNA:   3'- -UC-GCC-GGCUa--GCGCU---UCAGCCA-------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 34735 0.7 0.687757
Target:  5'- gGGCGGCCGcagagcgCGCGAcGgcgCGGUG-GGa -3'
miRNA:   3'- -UCGCCGGCua-----GCGCUuCa--GCCACgCC- -5'
11092 3' -58.6 NC_002794.1 + 177925 0.7 0.691612
Target:  5'- gGGUGGCuCGGggaaaacguuuuaucUCgGCGAGGUCGGUGgaCGGu -3'
miRNA:   3'- -UCGCCG-GCU---------------AG-CGCUUCAGCCAC--GCC- -5'
11092 3' -58.6 NC_002794.1 + 111133 0.7 0.696421
Target:  5'- cGGCGGCCGGUgcuccaCGCGGuagcgggucaggcAGacgCGGUGCaGGg -3'
miRNA:   3'- -UCGCCGGCUA------GCGCU-------------UCa--GCCACG-CC- -5'
11092 3' -58.6 NC_002794.1 + 116864 0.7 0.697381
Target:  5'- cGGCGGCCGuGUCGCGcucGUCaGGgggGCGc -3'
miRNA:   3'- -UCGCCGGC-UAGCGCuu-CAG-CCa--CGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.