Results 41 - 60 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11092 | 3' | -58.6 | NC_002794.1 | + | 116864 | 0.7 | 0.697381 |
Target: 5'- cGGCGGCCGuGUCGCGcucGUCaGGgggGCGc -3' miRNA: 3'- -UCGCCGGC-UAGCGCuu-CAG-CCa--CGCc -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 4227 | 0.69 | 0.706956 |
Target: 5'- uGUGGgCGuGUCuaGAcGUCGGUGCGGc -3' miRNA: 3'- uCGCCgGC-UAGcgCUuCAGCCACGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 104797 | 0.69 | 0.706956 |
Target: 5'- aGGCGGUgcugcuucgCGAUgGCcAGGUCGGUcaGCGGa -3' miRNA: 3'- -UCGCCG---------GCUAgCGcUUCAGCCA--CGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 129209 | 0.69 | 0.710771 |
Target: 5'- gAGCGGCCGAcggcgguggauaggCGCGAA--CGG-GCGGc -3' miRNA: 3'- -UCGCCGGCUa-------------GCGCUUcaGCCaCGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 95824 | 0.69 | 0.715525 |
Target: 5'- cGGCGGCCGGgggaGCGGcggcggcGGcCGGggagGCGGc -3' miRNA: 3'- -UCGCCGGCUag--CGCU-------UCaGCCa---CGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 176606 | 0.69 | 0.720263 |
Target: 5'- gAGCGGCCGGcacggccauccUCGUGgcGuUCGGcccggaacguuggauUGCGGa -3' miRNA: 3'- -UCGCCGGCU-----------AGCGCuuC-AGCC---------------ACGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 49021 | 0.69 | 0.725925 |
Target: 5'- cGGCGGCCGcg-GCGucGUCcGGcGCGGu -3' miRNA: 3'- -UCGCCGGCuagCGCuuCAG-CCaCGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 78988 | 0.69 | 0.725925 |
Target: 5'- uGCGGCCGcUCcCGGAGUCGcG-GCGa -3' miRNA: 3'- uCGCCGGCuAGcGCUUCAGC-CaCGCc -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 54241 | 0.69 | 0.725925 |
Target: 5'- aAGCGGCCGAgCGCGcGGUCcacgGCGc -3' miRNA: 3'- -UCGCCGGCUaGCGCuUCAGcca-CGCc -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 13071 | 0.69 | 0.725925 |
Target: 5'- aGGgGGCCGcgcgaccggCGCGAAGUCccgggggacgaGGUGCGu -3' miRNA: 3'- -UCgCCGGCua-------GCGCUUCAG-----------CCACGCc -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 43182 | 0.69 | 0.735303 |
Target: 5'- uAGCGGuuGcgCGCGccgaccgggaAGGUgGcGUGCGGa -3' miRNA: 3'- -UCGCCggCuaGCGC----------UUCAgC-CACGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 49426 | 0.69 | 0.735303 |
Target: 5'- cGGCGGCCG-UCaCGgcGUCcGGcGCGGu -3' miRNA: 3'- -UCGCCGGCuAGcGCuuCAG-CCaCGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 6133 | 0.69 | 0.7446 |
Target: 5'- uGCGGUCGAUCGgGggG-CGGaGCc- -3' miRNA: 3'- uCGCCGGCUAGCgCuuCaGCCaCGcc -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 89717 | 0.69 | 0.753807 |
Target: 5'- cGCGguGCCGAUccgCGCGgcGUCGGUccuuggggauucGCGGc -3' miRNA: 3'- uCGC--CGGCUA---GCGCuuCAGCCA------------CGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 98356 | 0.69 | 0.753807 |
Target: 5'- -cCGGCCGAUCGCcgcg-CGGcugGCGGg -3' miRNA: 3'- ucGCCGGCUAGCGcuucaGCCa--CGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 148101 | 0.69 | 0.753807 |
Target: 5'- cAGCuGCCGcUCaagaaGCGAcGGUCGGUGuCGGg -3' miRNA: 3'- -UCGcCGGCuAG-----CGCU-UCAGCCAC-GCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 142301 | 0.68 | 0.762916 |
Target: 5'- aGGCGGUacaGGUgGCGGAGgcggCGGcgcagGCGGc -3' miRNA: 3'- -UCGCCGg--CUAgCGCUUCa---GCCa----CGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 119235 | 0.68 | 0.762916 |
Target: 5'- aGGCGGUCGAggagCGUGuccUCGGcgGCGGc -3' miRNA: 3'- -UCGCCGGCUa---GCGCuucAGCCa-CGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 99572 | 0.68 | 0.762916 |
Target: 5'- cGCGGgCGAggggggUGCGGAGggcgCGGcgGCGGc -3' miRNA: 3'- uCGCCgGCUa-----GCGCUUCa---GCCa-CGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 142193 | 0.68 | 0.772814 |
Target: 5'- gAGCGGCagugCGgGAAGcggcggcggcagcggCGGUGCGGg -3' miRNA: 3'- -UCGCCGgcuaGCgCUUCa--------------GCCACGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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