Results 1 - 20 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11092 | 3' | -58.6 | NC_002794.1 | + | 140106 | 0.66 | 0.895662 |
Target: 5'- cGGCGG-CGAUCGaCGgcGgucgaCGGUggGCGGg -3' miRNA: 3'- -UCGCCgGCUAGC-GCuuCa----GCCA--CGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 68313 | 0.66 | 0.895662 |
Target: 5'- uGGCGGCCGA-CGCGuuccgcGGcCuGGUGacCGGg -3' miRNA: 3'- -UCGCCGGCUaGCGCu-----UCaG-CCAC--GCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 41261 | 0.66 | 0.895662 |
Target: 5'- cGGCGGCCcgucGUCGCGcuccGAGaaCGGcgGCGGc -3' miRNA: 3'- -UCGCCGGc---UAGCGC----UUCa-GCCa-CGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 12193 | 0.66 | 0.891869 |
Target: 5'- cGCGGCCGGgcgCcgcucggacgugccgGCGgcGUCGGcggcgccgGCGGc -3' miRNA: 3'- uCGCCGGCUa--G---------------CGCuuCAGCCa-------CGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 104887 | 0.66 | 0.882729 |
Target: 5'- aAGCgGGCCGGcCGCGAGG-CGccGUGCu- -3' miRNA: 3'- -UCG-CCGGCUaGCGCUUCaGC--CACGcc -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 119504 | 0.66 | 0.882729 |
Target: 5'- cGgGGUCGucggcggCGCGGAGcCGGccGCGGa -3' miRNA: 3'- uCgCCGGCua-----GCGCUUCaGCCa-CGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 11551 | 0.66 | 0.882729 |
Target: 5'- cGCGGCUGGUCGCuaGAAuGUCaGGgGCa- -3' miRNA: 3'- uCGCCGGCUAGCG--CUU-CAG-CCaCGcc -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 127343 | 0.66 | 0.882729 |
Target: 5'- cGCuGCCGAgacgcUCGCGgcGgCGGcGCGGc -3' miRNA: 3'- uCGcCGGCU-----AGCGCuuCaGCCaCGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 145250 | 0.66 | 0.882061 |
Target: 5'- uGCGgaaGCgGAUCGCGAAG-CGGUuauugccGUGGc -3' miRNA: 3'- uCGC---CGgCUAGCGCUUCaGCCA-------CGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 49588 | 0.66 | 0.875957 |
Target: 5'- -cCGGaucCCGAUCGCGA--UCGGcgacgGCGGg -3' miRNA: 3'- ucGCC---GGCUAGCGCUucAGCCa----CGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 44217 | 0.66 | 0.875957 |
Target: 5'- -cCGGCuCGggCGcCGAGGgcUCGGUGcCGGg -3' miRNA: 3'- ucGCCG-GCuaGC-GCUUC--AGCCAC-GCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 107004 | 0.66 | 0.875957 |
Target: 5'- cGCuGGCCGA-CGCGA---CGGUGCu- -3' miRNA: 3'- uCG-CCGGCUaGCGCUucaGCCACGcc -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 112335 | 0.66 | 0.868987 |
Target: 5'- gAGCGcGCCGGcCgGCGgcGcCGGcgGCGGg -3' miRNA: 3'- -UCGC-CGGCUaG-CGCuuCaGCCa-CGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 57416 | 0.66 | 0.868987 |
Target: 5'- cGUGGCCGG-CGUGcuGGUCGGcacgGCGc -3' miRNA: 3'- uCGCCGGCUaGCGCu-UCAGCCa---CGCc -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 116061 | 0.66 | 0.868987 |
Target: 5'- gAGCGcGaCUGGggUCGCGGAGcgcUCGGcGCGGc -3' miRNA: 3'- -UCGC-C-GGCU--AGCGCUUC---AGCCaCGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 146968 | 0.66 | 0.868987 |
Target: 5'- -aUGGaCCGccuGUCGCGAGGUCGGcGCc- -3' miRNA: 3'- ucGCC-GGC---UAGCGCUUCAGCCaCGcc -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 129816 | 0.66 | 0.868987 |
Target: 5'- cGCGucuGCCGcaucAUCGCgGAAGUCGaG-GCGGa -3' miRNA: 3'- uCGC---CGGC----UAGCG-CUUCAGC-CaCGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 156457 | 0.66 | 0.861823 |
Target: 5'- aGGCGGuuGGUUaggggGCGggGgacgaCGGgGCGGc -3' miRNA: 3'- -UCGCCggCUAG-----CGCuuCa----GCCaCGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 20375 | 0.66 | 0.861823 |
Target: 5'- uGC-GCCgGAUCGuCGAcG-CGGUGCGGc -3' miRNA: 3'- uCGcCGG-CUAGC-GCUuCaGCCACGCC- -5' |
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11092 | 3' | -58.6 | NC_002794.1 | + | 59195 | 0.66 | 0.861823 |
Target: 5'- uGGCGGUCGA-CGCGcacGUCGGcgucucggccGCGGc -3' miRNA: 3'- -UCGCCGGCUaGCGCuu-CAGCCa---------CGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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