miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 3' -58.6 NC_002794.1 + 156457 0.66 0.861823
Target:  5'- aGGCGGuuGGUUaggggGCGggGgacgaCGGgGCGGc -3'
miRNA:   3'- -UCGCCggCUAG-----CGCuuCa----GCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 121529 0.66 0.861823
Target:  5'- cGGCGGUCGucUCGaCGGAGccCGGUGaCGa -3'
miRNA:   3'- -UCGCCGGCu-AGC-GCUUCa-GCCAC-GCc -5'
11092 3' -58.6 NC_002794.1 + 104496 0.66 0.861096
Target:  5'- cGGCGGCCgGGUCGggcgagaacgggcUGAGGcgCGGguggcGCGGg -3'
miRNA:   3'- -UCGCCGG-CUAGC-------------GCUUCa-GCCa----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 96573 0.67 0.857434
Target:  5'- gAGCGGCUGGUCGUGAccuacaacGUcgaCGGUccgcucuuucuguacGCGGg -3'
miRNA:   3'- -UCGCCGGCUAGCGCUu-------CA---GCCA---------------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 70042 0.67 0.85447
Target:  5'- cAGCaGCacguaGGUCGCccGGUCGG-GCGGc -3'
miRNA:   3'- -UCGcCGg----CUAGCGcuUCAGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 105509 0.67 0.85447
Target:  5'- cGCcGCCGGUCGCGccGUCcgaaGCGGa -3'
miRNA:   3'- uCGcCGGCUAGCGCuuCAGcca-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 26653 0.67 0.85447
Target:  5'- cGGCGGCCGGcucgUCgGCGggGU-GGaGCGc -3'
miRNA:   3'- -UCGCCGGCU----AG-CGCuuCAgCCaCGCc -5'
11092 3' -58.6 NC_002794.1 + 55393 0.67 0.85447
Target:  5'- aGGCGGCCGAggCGgcCGAGG-CGGccgagGCGa -3'
miRNA:   3'- -UCGCCGGCUa-GC--GCUUCaGCCa----CGCc -5'
11092 3' -58.6 NC_002794.1 + 126250 0.67 0.846935
Target:  5'- cGUGGCg---CGCGAGGUCGGcggcuggcugGCGGc -3'
miRNA:   3'- uCGCCGgcuaGCGCUUCAGCCa---------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 52867 0.67 0.846171
Target:  5'- cGCGGCCuuccgguacacccGAUgGUGggGUCGaacGCGGc -3'
miRNA:   3'- uCGCCGG-------------CUAgCGCuuCAGCca-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 36975 0.67 0.839222
Target:  5'- cGCaGGagGAUCGCGcgcAGGUCGGcgagGCGGa -3'
miRNA:   3'- uCG-CCggCUAGCGC---UUCAGCCa---CGCC- -5'
11092 3' -58.6 NC_002794.1 + 89374 0.67 0.839222
Target:  5'- aAGCGaGCCGuuUCG-GGAG-CGGUcGCGGu -3'
miRNA:   3'- -UCGC-CGGCu-AGCgCUUCaGCCA-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 72476 0.67 0.839222
Target:  5'- cGGCGGCgccgaaaagaCGAUCaCGcAGUCGGgcacGCGGc -3'
miRNA:   3'- -UCGCCG----------GCUAGcGCuUCAGCCa---CGCC- -5'
11092 3' -58.6 NC_002794.1 + 67025 0.67 0.839222
Target:  5'- cGGCGGCCGGcucccgccgcgUCGCGGAccCGGcguccGUGGg -3'
miRNA:   3'- -UCGCCGGCU-----------AGCGCUUcaGCCa----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 113504 0.67 0.839222
Target:  5'- cGCGGCCGAgagcCGCGGAGggagcuccgcCGGcucgGCGu -3'
miRNA:   3'- uCGCCGGCUa---GCGCUUCa---------GCCa---CGCc -5'
11092 3' -58.6 NC_002794.1 + 102358 0.67 0.839222
Target:  5'- cGGCGuGCCGcuUCGUGAAGaCGGUGg-- -3'
miRNA:   3'- -UCGC-CGGCu-AGCGCUUCaGCCACgcc -5'
11092 3' -58.6 NC_002794.1 + 116358 0.67 0.839222
Target:  5'- -aCGGCCGcgCGgucCGAccGGUCGGUggcguGCGGg -3'
miRNA:   3'- ucGCCGGCuaGC---GCU--UCAGCCA-----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 128161 0.67 0.830539
Target:  5'- cGGCGGCuCGcgcCGCGGacgGGUCGGUGaccucguCGGu -3'
miRNA:   3'- -UCGCCG-GCua-GCGCU---UCAGCCAC-------GCC- -5'
11092 3' -58.6 NC_002794.1 + 102559 0.67 0.823287
Target:  5'- cGGCGGCCcuggUGCuGucGUCGGUGCu- -3'
miRNA:   3'- -UCGCCGGcua-GCG-CuuCAGCCACGcc -5'
11092 3' -58.6 NC_002794.1 + 110628 0.67 0.823287
Target:  5'- cGCGGCgccgCGGcgGCGggGUCGGguuucuccgGCGGc -3'
miRNA:   3'- uCGCCG----GCUagCGCuuCAGCCa--------CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.