miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 3' -58.6 NC_002794.1 + 110628 0.67 0.823287
Target:  5'- cGCGGCgccgCGGcgGCGggGUCGGguuucuccgGCGGc -3'
miRNA:   3'- uCGCCG----GCUagCGCuuCAGCCa--------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 111755 0.67 0.823287
Target:  5'- uGGC-GCCGcgCgGCGccGUCGGgGCGGg -3'
miRNA:   3'- -UCGcCGGCuaG-CGCuuCAGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 95780 0.67 0.81508
Target:  5'- cGGCGGCCGGg-GCGAGa--GGcGCGGc -3'
miRNA:   3'- -UCGCCGGCUagCGCUUcagCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 111430 0.67 0.81508
Target:  5'- gAGCcGCCaGAUCG-GcAGUCGGgGCGGg -3'
miRNA:   3'- -UCGcCGG-CUAGCgCuUCAGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 111631 0.67 0.81508
Target:  5'- cGCGGCCGc-CGCc-GGUCGGgcgccGCGGc -3'
miRNA:   3'- uCGCCGGCuaGCGcuUCAGCCa----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 83847 0.67 0.81508
Target:  5'- cGGUcGCCGAUCGgGAagccgucgucccGGUCGGcGCGa -3'
miRNA:   3'- -UCGcCGGCUAGCgCU------------UCAGCCaCGCc -5'
11092 3' -58.6 NC_002794.1 + 139118 0.67 0.81508
Target:  5'- cGCGGgCGAUCaCGGAGaCGGcgucGCGGu -3'
miRNA:   3'- uCGCCgGCUAGcGCUUCaGCCa---CGCC- -5'
11092 3' -58.6 NC_002794.1 + 90794 0.67 0.81508
Target:  5'- -aCGGUCGAcCGCGAuuuccaGGUgGcGUGCGGa -3'
miRNA:   3'- ucGCCGGCUaGCGCU------UCAgC-CACGCC- -5'
11092 3' -58.6 NC_002794.1 + 113882 0.68 0.806721
Target:  5'- -uCGGCCGcggCGCGc-GUCGGcGCGGu -3'
miRNA:   3'- ucGCCGGCua-GCGCuuCAGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 92269 0.68 0.806721
Target:  5'- cGGCGGCgccgggCGAggCGCGcaAGGUCGGcgacgagGCGGg -3'
miRNA:   3'- -UCGCCG------GCUa-GCGC--UUCAGCCa------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 190764 0.68 0.798218
Target:  5'- cGGCGGCCGcgCGUcccgguagauGAAcUCGGUcCGGg -3'
miRNA:   3'- -UCGCCGGCuaGCG----------CUUcAGCCAcGCC- -5'
11092 3' -58.6 NC_002794.1 + 108334 0.68 0.798218
Target:  5'- cGGCGGCgcaggaggaGGUgGCGGAG-CGGggaGCGGa -3'
miRNA:   3'- -UCGCCGg--------CUAgCGCUUCaGCCa--CGCC- -5'
11092 3' -58.6 NC_002794.1 + 139447 0.68 0.798218
Target:  5'- cGCGcGCCGAUCG-GcAGGUCGucGUGCGc -3'
miRNA:   3'- uCGC-CGGCUAGCgC-UUCAGC--CACGCc -5'
11092 3' -58.6 NC_002794.1 + 156399 0.68 0.798218
Target:  5'- gAGCGGCCGGcgcCGCGGccgcGGccaCGGccgGCGGg -3'
miRNA:   3'- -UCGCCGGCUa--GCGCU----UCa--GCCa--CGCC- -5'
11092 3' -58.6 NC_002794.1 + 147051 0.68 0.798218
Target:  5'- cGGCGGCCGGUCuaaggaCGGAGccgCGG-GCGc -3'
miRNA:   3'- -UCGCCGGCUAGc-----GCUUCa--GCCaCGCc -5'
11092 3' -58.6 NC_002794.1 + 40400 0.68 0.798218
Target:  5'- ---cGCCGAuucggUCGCGggGUCGGccgGCGa -3'
miRNA:   3'- ucgcCGGCU-----AGCGCuuCAGCCa--CGCc -5'
11092 3' -58.6 NC_002794.1 + 101031 0.68 0.79736
Target:  5'- cGCgGGCCGggCGCG-GGUCGGccgcuacUGCGu -3'
miRNA:   3'- uCG-CCGGCuaGCGCuUCAGCC-------ACGCc -5'
11092 3' -58.6 NC_002794.1 + 12155 0.68 0.789578
Target:  5'- gAGCGGCCGAUCGCccGGAucGUCGccGCc- -3'
miRNA:   3'- -UCGCCGGCUAGCG--CUU--CAGCcaCGcc -5'
11092 3' -58.6 NC_002794.1 + 66018 0.68 0.789578
Target:  5'- aGGCGGCCGcggucGUCGCcgucGucGUCGGgccggcaGCGGc -3'
miRNA:   3'- -UCGCCGGC-----UAGCG----CuuCAGCCa------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 122975 0.68 0.789578
Target:  5'- gGGUGGCUGuacgCGCGcc--UGGUGCGGg -3'
miRNA:   3'- -UCGCCGGCua--GCGCuucaGCCACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.