miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 3' -58.6 NC_002794.1 + 49021 0.69 0.725925
Target:  5'- cGGCGGCCGcg-GCGucGUCcGGcGCGGu -3'
miRNA:   3'- -UCGCCGGCuagCGCuuCAG-CCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 49426 0.69 0.735303
Target:  5'- cGGCGGCCG-UCaCGgcGUCcGGcGCGGu -3'
miRNA:   3'- -UCGCCGGCuAGcGCuuCAG-CCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 49588 0.66 0.875957
Target:  5'- -cCGGaucCCGAUCGCGA--UCGGcgacgGCGGg -3'
miRNA:   3'- ucGCC---GGCUAGCGCUucAGCCa----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 52867 0.67 0.846171
Target:  5'- cGCGGCCuuccgguacacccGAUgGUGggGUCGaacGCGGc -3'
miRNA:   3'- uCGCCGG-------------CUAgCGCuuCAGCca-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 54241 0.69 0.725925
Target:  5'- aAGCGGCCGAgCGCGcGGUCcacgGCGc -3'
miRNA:   3'- -UCGCCGGCUaGCGCuUCAGcca-CGCc -5'
11092 3' -58.6 NC_002794.1 + 55301 0.71 0.609875
Target:  5'- cGGCGGCgGcGUCGCGgcGggcgCGG-GCGGc -3'
miRNA:   3'- -UCGCCGgC-UAGCGCuuCa---GCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 55357 0.7 0.648915
Target:  5'- aGGCGGCCGAggCGgcCGAGG-CGGccgagGCGGc -3'
miRNA:   3'- -UCGCCGGCUa-GC--GCUUCaGCCa----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 55393 0.67 0.85447
Target:  5'- aGGCGGCCGAggCGgcCGAGG-CGGccgagGCGa -3'
miRNA:   3'- -UCGCCGGCUa-GC--GCUUCaGCCa----CGCc -5'
11092 3' -58.6 NC_002794.1 + 57416 0.66 0.868987
Target:  5'- cGUGGCCGG-CGUGcuGGUCGGcacgGCGc -3'
miRNA:   3'- uCGCCGGCUaGCGCu-UCAGCCa---CGCc -5'
11092 3' -58.6 NC_002794.1 + 59195 0.66 0.861823
Target:  5'- uGGCGGUCGA-CGCGcacGUCGGcgucucggccGCGGc -3'
miRNA:   3'- -UCGCCGGCUaGCGCuu-CAGCCa---------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 61533 0.7 0.646963
Target:  5'- cGGCGGCCGc-CGCGAAGacgacgccgccgCGGcgGCGGc -3'
miRNA:   3'- -UCGCCGGCuaGCGCUUCa-----------GCCa-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 63170 0.71 0.600137
Target:  5'- -aCGGCCGAggcCGCGAAG-CGGUcGCGc -3'
miRNA:   3'- ucGCCGGCUa--GCGCUUCaGCCA-CGCc -5'
11092 3' -58.6 NC_002794.1 + 66018 0.68 0.789578
Target:  5'- aGGCGGCCGcggucGUCGCcgucGucGUCGGgccggcaGCGGc -3'
miRNA:   3'- -UCGCCGGC-----UAGCG----CuuCAGCCa------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 67025 0.67 0.839222
Target:  5'- cGGCGGCCGGcucccgccgcgUCGCGGAccCGGcguccGUGGg -3'
miRNA:   3'- -UCGCCGGCU-----------AGCGCUUcaGCCa----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 68313 0.66 0.895662
Target:  5'- uGGCGGCCGA-CGCGuuccgcGGcCuGGUGacCGGg -3'
miRNA:   3'- -UCGCCGGCUaGCGCu-----UCaG-CCAC--GCC- -5'
11092 3' -58.6 NC_002794.1 + 70042 0.67 0.85447
Target:  5'- cAGCaGCacguaGGUCGCccGGUCGG-GCGGc -3'
miRNA:   3'- -UCGcCGg----CUAGCGcuUCAGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 72476 0.67 0.839222
Target:  5'- cGGCGGCgccgaaaagaCGAUCaCGcAGUCGGgcacGCGGc -3'
miRNA:   3'- -UCGCCG----------GCUAGcGCuUCAGCCa---CGCC- -5'
11092 3' -58.6 NC_002794.1 + 74076 0.73 0.532897
Target:  5'- uGGCGGCCcuccUCGCcGAGUCGGgacagcUGCGGc -3'
miRNA:   3'- -UCGCCGGcu--AGCGcUUCAGCC------ACGCC- -5'
11092 3' -58.6 NC_002794.1 + 78988 0.69 0.725925
Target:  5'- uGCGGCCGcUCcCGGAGUCGcG-GCGa -3'
miRNA:   3'- uCGCCGGCuAGcGCUUCAGC-CaCGCc -5'
11092 3' -58.6 NC_002794.1 + 83847 0.67 0.81508
Target:  5'- cGGUcGCCGAUCGgGAagccgucgucccGGUCGGcGCGa -3'
miRNA:   3'- -UCGcCGGCUAGCgCU------------UCAGCCaCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.