miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 3' -58.6 NC_002794.1 + 89374 0.67 0.839222
Target:  5'- aAGCGaGCCGuuUCG-GGAG-CGGUcGCGGu -3'
miRNA:   3'- -UCGC-CGGCu-AGCgCUUCaGCCA-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 89717 0.69 0.753807
Target:  5'- cGCGguGCCGAUccgCGCGgcGUCGGUccuuggggauucGCGGc -3'
miRNA:   3'- uCGC--CGGCUA---GCGCuuCAGCCA------------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 90794 0.67 0.81508
Target:  5'- -aCGGUCGAcCGCGAuuuccaGGUgGcGUGCGGa -3'
miRNA:   3'- ucGCCGGCUaGCGCU------UCAgC-CACGCC- -5'
11092 3' -58.6 NC_002794.1 + 92269 0.68 0.806721
Target:  5'- cGGCGGCgccgggCGAggCGCGcaAGGUCGGcgacgagGCGGg -3'
miRNA:   3'- -UCGCCG------GCUa-GCGC--UUCAGCCa------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 94035 0.72 0.542364
Target:  5'- cGGCGGgcCCGAgaGCGgcGgCGGUGCGGg -3'
miRNA:   3'- -UCGCC--GGCUagCGCuuCaGCCACGCC- -5'
11092 3' -58.6 NC_002794.1 + 94481 0.68 0.789578
Target:  5'- cGGCGGCgGA-CGCGGccgCGGgccgugGCGGg -3'
miRNA:   3'- -UCGCCGgCUaGCGCUucaGCCa-----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 95780 0.67 0.81508
Target:  5'- cGGCGGCCGGg-GCGAGa--GGcGCGGc -3'
miRNA:   3'- -UCGCCGGCUagCGCUUcagCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 95824 0.69 0.715525
Target:  5'- cGGCGGCCGGgggaGCGGcggcggcGGcCGGggagGCGGc -3'
miRNA:   3'- -UCGCCGGCUag--CGCU-------UCaGCCa---CGCC- -5'
11092 3' -58.6 NC_002794.1 + 96573 0.67 0.857434
Target:  5'- gAGCGGCUGGUCGUGAccuacaacGUcgaCGGUccgcucuuucuguacGCGGg -3'
miRNA:   3'- -UCGCCGGCUAGCGCUu-------CA---GCCA---------------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 98356 0.69 0.753807
Target:  5'- -cCGGCCGAUCGCcgcg-CGGcugGCGGg -3'
miRNA:   3'- ucGCCGGCUAGCGcuucaGCCa--CGCC- -5'
11092 3' -58.6 NC_002794.1 + 99572 0.68 0.762916
Target:  5'- cGCGGgCGAggggggUGCGGAGggcgCGGcgGCGGc -3'
miRNA:   3'- uCGCCgGCUa-----GCGCUUCa---GCCa-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 100763 0.78 0.271687
Target:  5'- cGCuGGCCGGUCGCGGAGUacacgcgccugCGGUucGCGGc -3'
miRNA:   3'- uCG-CCGGCUAGCGCUUCA-----------GCCA--CGCC- -5'
11092 3' -58.6 NC_002794.1 + 101031 0.68 0.79736
Target:  5'- cGCgGGCCGggCGCG-GGUCGGccgcuacUGCGu -3'
miRNA:   3'- uCG-CCGGCuaGCGCuUCAGCC-------ACGCc -5'
11092 3' -58.6 NC_002794.1 + 101495 0.81 0.182819
Target:  5'- cGGCGGCCGGUC-CGAg--CGGUGCGGc -3'
miRNA:   3'- -UCGCCGGCUAGcGCUucaGCCACGCC- -5'
11092 3' -58.6 NC_002794.1 + 102358 0.67 0.839222
Target:  5'- cGGCGuGCCGcuUCGUGAAGaCGGUGg-- -3'
miRNA:   3'- -UCGC-CGGCu-AGCGCUUCaGCCACgcc -5'
11092 3' -58.6 NC_002794.1 + 102559 0.67 0.823287
Target:  5'- cGGCGGCCcuggUGCuGucGUCGGUGCu- -3'
miRNA:   3'- -UCGCCGGcua-GCG-CuuCAGCCACGcc -5'
11092 3' -58.6 NC_002794.1 + 104496 0.66 0.861096
Target:  5'- cGGCGGCCgGGUCGggcgagaacgggcUGAGGcgCGGguggcGCGGg -3'
miRNA:   3'- -UCGCCGG-CUAGC-------------GCUUCa-GCCa----CGCC- -5'
11092 3' -58.6 NC_002794.1 + 104797 0.69 0.706956
Target:  5'- aGGCGGUgcugcuucgCGAUgGCcAGGUCGGUcaGCGGa -3'
miRNA:   3'- -UCGCCG---------GCUAgCGcUUCAGCCA--CGCC- -5'
11092 3' -58.6 NC_002794.1 + 104887 0.66 0.882729
Target:  5'- aAGCgGGCCGGcCGCGAGG-CGccGUGCu- -3'
miRNA:   3'- -UCG-CCGGCUaGCGCUUCaGC--CACGcc -5'
11092 3' -58.6 NC_002794.1 + 105509 0.67 0.85447
Target:  5'- cGCcGCCGGUCGCGccGUCcgaaGCGGa -3'
miRNA:   3'- uCGcCGGCUAGCGCuuCAGcca-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.