miRNA display CGI


Results 1 - 20 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11092 3' -58.6 NC_002794.1 + 190764 0.68 0.798218
Target:  5'- cGGCGGCCGcgCGUcccgguagauGAAcUCGGUcCGGg -3'
miRNA:   3'- -UCGCCGGCuaGCG----------CUUcAGCCAcGCC- -5'
11092 3' -58.6 NC_002794.1 + 186301 0.7 0.658661
Target:  5'- aGGCGGCCGGUCGCcg---CGGcGCGc -3'
miRNA:   3'- -UCGCCGGCUAGCGcuucaGCCaCGCc -5'
11092 3' -58.6 NC_002794.1 + 185178 0.78 0.265614
Target:  5'- cGCGGCgCGGUCgGCGcGGUCGGcGCGGu -3'
miRNA:   3'- uCGCCG-GCUAG-CGCuUCAGCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 180954 0.76 0.345915
Target:  5'- cGCGGCCGA-CGCGGAcuccGUCGGgGCGa -3'
miRNA:   3'- uCGCCGGCUaGCGCUU----CAGCCaCGCc -5'
11092 3' -58.6 NC_002794.1 + 179117 0.7 0.648915
Target:  5'- cGCGGuCCGggCGCGcGGUCGGU-CGa -3'
miRNA:   3'- uCGCC-GGCuaGCGCuUCAGCCAcGCc -5'
11092 3' -58.6 NC_002794.1 + 177925 0.7 0.691612
Target:  5'- gGGUGGCuCGGggaaaacguuuuaucUCgGCGAGGUCGGUGgaCGGu -3'
miRNA:   3'- -UCGCCG-GCU---------------AG-CGCUUCAGCCAC--GCC- -5'
11092 3' -58.6 NC_002794.1 + 176606 0.69 0.720263
Target:  5'- gAGCGGCCGGcacggccauccUCGUGgcGuUCGGcccggaacguuggauUGCGGa -3'
miRNA:   3'- -UCGCCGGCU-----------AGCGCuuC-AGCC---------------ACGCC- -5'
11092 3' -58.6 NC_002794.1 + 161051 0.74 0.467652
Target:  5'- uGCGGCCGAuUCGaCGAauacgaaAGUCGGUcCGGu -3'
miRNA:   3'- uCGCCGGCU-AGC-GCU-------UCAGCCAcGCC- -5'
11092 3' -58.6 NC_002794.1 + 156504 0.74 0.45967
Target:  5'- uAGCGGCCcguuGAUCGCGAGuccgCGGUGaGGg -3'
miRNA:   3'- -UCGCCGG----CUAGCGCUUca--GCCACgCC- -5'
11092 3' -58.6 NC_002794.1 + 156457 0.66 0.861823
Target:  5'- aGGCGGuuGGUUaggggGCGggGgacgaCGGgGCGGc -3'
miRNA:   3'- -UCGCCggCUAG-----CGCuuCa----GCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 156399 0.68 0.798218
Target:  5'- gAGCGGCCGGcgcCGCGGccgcGGccaCGGccgGCGGg -3'
miRNA:   3'- -UCGCCGGCUa--GCGCU----UCa--GCCa--CGCC- -5'
11092 3' -58.6 NC_002794.1 + 154349 0.72 0.59042
Target:  5'- cGCGGCCGAgcucccgCGCGGuccAGgccgCGGcgGCGGc -3'
miRNA:   3'- uCGCCGGCUa------GCGCU---UCa---GCCa-CGCC- -5'
11092 3' -58.6 NC_002794.1 + 149465 0.73 0.495672
Target:  5'- gGGCGGUCGAggaGCGAGGggGG-GCGGc -3'
miRNA:   3'- -UCGCCGGCUag-CGCUUCagCCaCGCC- -5'
11092 3' -58.6 NC_002794.1 + 148101 0.69 0.753807
Target:  5'- cAGCuGCCGcUCaagaaGCGAcGGUCGGUGuCGGg -3'
miRNA:   3'- -UCGcCGGCuAG-----CGCU-UCAGCCAC-GCC- -5'
11092 3' -58.6 NC_002794.1 + 147051 0.68 0.798218
Target:  5'- cGGCGGCCGGUCuaaggaCGGAGccgCGG-GCGc -3'
miRNA:   3'- -UCGCCGGCUAGc-----GCUUCa--GCCaCGCc -5'
11092 3' -58.6 NC_002794.1 + 146968 0.66 0.868987
Target:  5'- -aUGGaCCGccuGUCGCGAGGUCGGcGCc- -3'
miRNA:   3'- ucGCC-GGC---UAGCGCUUCAGCCaCGcc -5'
11092 3' -58.6 NC_002794.1 + 146824 0.74 0.466762
Target:  5'- cGCGGUCGcugucguuuggCGCGAgAGUCGGUGCGc -3'
miRNA:   3'- uCGCCGGCua---------GCGCU-UCAGCCACGCc -5'
11092 3' -58.6 NC_002794.1 + 145591 0.82 0.170092
Target:  5'- cGGCGGCCGGcuccCGCGGAGUCGG-GCGc -3'
miRNA:   3'- -UCGCCGGCUa---GCGCUUCAGCCaCGCc -5'
11092 3' -58.6 NC_002794.1 + 145250 0.66 0.882061
Target:  5'- uGCGgaaGCgGAUCGCGAAG-CGGUuauugccGUGGc -3'
miRNA:   3'- uCGC---CGgCUAGCGCUUCaGCCA-------CGCC- -5'
11092 3' -58.6 NC_002794.1 + 143312 0.68 0.780809
Target:  5'- cGCGGCgggauggaaguCGGUCGCGugcUCGGgcaGCGGg -3'
miRNA:   3'- uCGCCG-----------GCUAGCGCuucAGCCa--CGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.